C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: translin-associated factor X
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000366639 TSNAX-001 ENSG00000116918 9606 + 1:231528653-231566524 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000366639
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000366639 13.191±0.00 11.463±0.00 1.503±0.00 11.839±6.28 8.304±2.35 4.851±1.06 6.355±2.79 8.273±4.19 5.867±1.42 4.679±0.45 14.633±12.01 6.297±1.61 5.460±1.54 12.418±2.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006AY CIL_0006AY_0001 CGP 1:231363751-231819244
CIL_0006B1 CIL_0006B1_0001 CGP 1:231528653-232041272

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 TAS DNA binding
GO:0005634 IEA nucleus
GO:0005794 IEA Golgi apparatus
GO:0007275 IEA multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0008565 TAS protein transporter activity
GO:0015031 TAS protein transport
GO:0030154 IEA cell differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075896 Tsnax-201 protein_coding Mus_musculus 0 926
ENSMUST00000119238 Gm5761-001 processed_pseudogene Mus_musculus 0 712

Loading