C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000117410 ATP6V0B 9606 + 1:43974487-43978295 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000236067 ATP6V0B-004 43974948-43978289 protein_coding
  ENST00000461670 ATP6V0B-009 43974960-43976625 nonsense_mediated_decay
  ENST00000468183 ATP6V0B-003 43974971-43978295 retained_intron
  ENST00000471859 ATP6V0B-006 43974951-43978023 protein_coding
  ENST00000472174 ATP6V0B-001 43974648-43978294 protein_coding
  ENST00000472277 ATP6V0B-008 43974958-43977197 processed_transcript
  ENST00000472505 ATP6V0B-013 43974487-43976823 protein_coding
  ENST00000473485 ATP6V0B-002 43974972-43978292 retained_intron
  ENST00000496131 ATP6V0B-010 43974979-43977114 retained_intron
  ENST00000498208 ATP6V0B-007 43975100-43976379 nonsense_mediated_decay
  ENST00000498664 ATP6V0B-011 43976055-43978295 protein_coding
  ENST00000532072 ATP6V0B-014 43975837-43976541 retained_intron
  ENST00000532642 ATP6V0B-012 43974944-43978213 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000236067ENST00000468183ENST00000472174ENST00000472277ENST00000473485ENST00000496131ENST00000498208ENST00000498664ENST00000532642
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000236067 25.695±0.00 51.714±0.00 N/A 22.131±18.97 25.100±0.00 16.677±15.44 9.950±8.64 130.097±0.00 60.912±0.00 33.297±32.45 13.305±7.86 6.517±4.75 22.415±0.00 34.174±0.00
ENST00000468183 N/A N/A N/A N/A N/A N/A N/A N/A 0.530±0.00 N/A N/A N/A N/A N/A
ENST00000472174 11.303±0.00 13.870±0.00 1.093±0.00 20.346±15.48 16.943±0.00 11.269±0.00 16.369±0.00 73.608±0.00 37.451±0.00 44.956±0.00 12.412±11.22 38.091±21.10 58.353±7.45 15.832±0.00
ENST00000472277 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.413±0.00 N/A N/A N/A N/A
ENST00000473485 N/A N/A 0.311±0.00 N/A 1.671±0.00 0.437±0.00 N/A 0.952±0.00 N/A N/A N/A N/A N/A 2.146±0.00
ENST00000496131 N/A N/A N/A N/A N/A N/A 0.427±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000498208 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.892±0.00 N/A N/A
ENST00000498664 N/A N/A 0.708±0.00 16.106±0.00 2.308±0.00 2.548±0.00 N/A 2.382±0.00 0.618±0.00 4.349±0.00 1.151±0.00 27.392±6.64 56.154±10.29 10.144±0.00
ENST00000532642 N/A N/A 0.296±0.00 2.255±0.00 N/A N/A 0.305±0.00 N/A 0.169±0.00 0.507±0.00 N/A 3.927±2.75 N/A 3.322±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B8 CIL_0009B8_0001 VISTA 1:43734711-44337665
CIL_0008SF CIL_0008SF_0001 VISTA 1:43949748-44550457

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 TAS transporter activity
GO:0005768 IEA endosome
GO:0005773 IEA vacuole
GO:0006879 TAS cellular iron ion homeostasis
GO:0008286 TAS insulin receptor signaling pathway
GO:0010008 TAS endosome membrane
GO:0015078 IEA hydrogen ion transmembrane transporter activity
GO:0015991 IEA ATP hydrolysis coupled proton transport
GO:0015992 TAS proton transport
GO:0016021 IEA integral component of membrane
GO:0030670 TAS phagocytic vesicle membrane
GO:0033177 IEA proton-transporting two-sector ATPase complex, proton-transporting domain
GO:0033179 IEA proton-transporting V-type ATPase, V0 domain
GO:0033572 TAS transferrin transport
GO:0051701 TAS interaction with host
GO:0055085 TAS transmembrane transport
GO:0090382 TAS phagosome maturation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000031681 atp6v0b ATPase, H+ transporting, V0 subunit B protein_coding Danio_rerio
ENSMUSG00000033379 Atp6v0b ATPase, H+ transporting, lysosomal V0 subunit B protein_coding Mus_musculus

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