C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATPase, H+ transporting, lysosomal V0 subunit B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000033379 Atp6v0b 10090 - 4:117884326-117887333 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000036380 Atp6v0b-001 117884326-117887329 protein_coding
  ENSMUST00000124974 Atp6v0b-004 117885164-117886636 retained_intron
  ENSMUST00000132073 Atp6v0b-006 117885635-117887287 protein_coding
  ENSMUST00000133530 Atp6v0b-002 117884330-117885894 retained_intron
  ENSMUST00000136596 Atp6v0b-008 117886281-117887333 protein_coding
  ENSMUST00000147845 Atp6v0b-005 117886322-117887327 protein_coding
  ENSMUST00000149868 Atp6v0b-009 117885231-117886558 protein_coding
  ENSMUST00000150204 Atp6v0b-007 117884333-117887320 protein_coding
  ENSMUST00000152356 Atp6v0b-003 117884445-117885800 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000036380ENSMUST00000133530ENSMUST00000147845ENSMUST00000149868
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000036380 141.954±10.72 303.821±15.52 99.018±30.41 136.035±62.57 120.114±31.37 189.433±33.23 92.296±10.59 278.323±10.04 113.214±16.47 171.294±21.41 57.883±3.25 108.527±39.72 114.395±68.89 81.395±11.08
ENSMUST00000133530 51.189±1.57 N/A 24.252±0.00 49.118±0.00 65.286±12.30 70.080±17.43 31.406±7.35 92.631±16.56 N/A 62.268±12.55 N/A 55.856±16.66 N/A 39.086±8.08
ENSMUST00000147845 34.115±3.64 61.860±11.02 50.872±19.10 42.326±9.87 40.719±2.38 42.740±4.90 N/A 33.881±0.00 28.704±0.91 32.841±9.78 N/A 34.637±5.94 42.796±0.00 39.418±8.59
ENSMUST00000149868 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 33.258±0.64 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SF CIL_0008SF_0002 VISTA 4:117346906-117947610
CIL_0009B8 CIL_0009B8_0002 VISTA 4:117528714-118131599
CIL_000029 CIL_000029_0002 CGP 4:117869260-117887333

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005768 IDA endosome
GO:0008553 ISA hydrogen-exporting ATPase activity, phosphorylative mechanism
GO:0015991 ISA ATP hydrolysis coupled proton transport
GO:0016021 IDA integral component of membrane
GO:0016471 ISA vacuolar proton-transporting V-type ATPase complex
GO:0033179 IEA proton-transporting V-type ATPase, V0 domain

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000031681 atp6v0b ATPase, H+ transporting, V0 subunit B protein_coding Danio_rerio
ENSG00000117410 ATP6V0B ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b protein_coding Homo_sapiens

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