C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000472174 ATP6V0B-001 ENSG00000117410 9606 + 1:43974648-43978294 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000472174
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000472174 11.303±0.00 13.870±0.00 1.093±0.00 20.346±15.48 16.943±0.00 11.269±0.00 16.369±0.00 73.608±0.00 37.451±0.00 44.956±0.00 12.412±11.22 38.091±21.10 58.353±7.45 15.832±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B8 CIL_0009B8_0001 VISTA 1:43734711-44337665
CIL_0008SF CIL_0008SF_0001 VISTA 1:43949748-44550457

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 TAS transporter activity
GO:0005773 IEA vacuole
GO:0006879 TAS cellular iron ion homeostasis
GO:0008286 TAS insulin receptor signaling pathway
GO:0010008 TAS endosome membrane
GO:0015078 IEA hydrogen ion transmembrane transporter activity
GO:0015991 IEA ATP hydrolysis coupled proton transport
GO:0015992 TAS proton transport
GO:0030670 TAS phagocytic vesicle membrane
GO:0033177 IEA proton-transporting two-sector ATPase complex, proton-transporting domain
GO:0033179 IEA proton-transporting V-type ATPase, V0 domain
GO:0033572 TAS transferrin transport
GO:0051701 TAS interaction with host
GO:0055085 TAS transmembrane transport
GO:0090382 TAS phagosome maturation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000036380 Atp6v0b-001 protein_coding Mus_musculus 0 1168
ENSMUST00000150204 Atp6v0b-007 protein_coding Mus_musculus 0 989
ENSMUST00000133530 Atp6v0b-002 retained_intron Mus_musculus 0 804
ENSMUST00000152356 Atp6v0b-003 retained_intron Mus_musculus 0 595
ENSMUST00000132073 Atp6v0b-006 protein_coding Mus_musculus 0 405
ENSMUST00000124974 Atp6v0b-004 retained_intron Mus_musculus 0 259
ENSMUST00000136596 Atp6v0b-008 protein_coding Mus_musculus 3e-39 167
ENSMUST00000147845 Atp6v0b-005 protein_coding Mus_musculus 1e-23 115

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