C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: proline-rich coiled-coil 2C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000117523 PRRC2C 9606 + 1:171485551-171593511 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000338920 PRRC2C-010 171485556-171593511 protein_coding
  ENST00000367742 PRRC2C-001 171485551-171593511 protein_coding
  ENST00000392078 PRRC2C-201 171485551-171532775 protein_coding
  ENST00000426496 PRRC2C-202 171512032-171593511 protein_coding
  ENST00000463586 PRRC2C-004 171509560-171515796 retained_intron
  ENST00000467601 PRRC2C-005 171485596-171515859 processed_transcript
  ENST00000470689 PRRC2C-011 171523349-171524870 processed_transcript
  ENST00000476522 PRRC2C-003 171485551-171532792 processed_transcript
  ENST00000480806 PRRC2C-006 171522515-171524855 processed_transcript
  ENST00000492811 PRRC2C-009 171587662-171591313 processed_transcript
  ENST00000495585 PRRC2C-002 171541830-171593511 protein_coding
  ENST00000498596 PRRC2C-008 171587073-171592223 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000338920ENST00000367742ENST00000426496ENST00000476522ENST00000495585
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000338920 N/A N/A N/A N/A N/A N/A 0.718±0.00 0.405±0.00 N/A N/A 20.121±0.00 4.894±0.00 14.245±0.00
ENST00000367742 6.228±0.00 N/A 3.499±0.67 6.294±0.00 2.742±0.00 2.729±0.00 0.991±0.00 3.336±2.39 2.943±1.46 N/A 6.824±3.28 5.566±3.76 N/A
ENST00000426496 11.137±0.00 2.680±0.00 6.101±0.00 N/A 12.085±0.00 N/A 4.660±0.00 0.606±0.00 N/A 1.468±0.00 3.675±2.53 7.428±6.42 19.367±0.00
ENST00000476522 N/A N/A N/A N/A N/A N/A N/A N/A 7.626±0.00 N/A 48.420±0.00 18.067±0.00 23.510±0.00
ENST00000495585 N/A N/A 2.012±0.00 N/A 5.322±0.00 1.820±0.00 4.195±2.31 2.745±0.00 10.823±0.00 2.456±1.42 5.427±0.00 4.718±0.48 16.130±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007X5 CIL_0007X5_0001 VISTA 1:170981906-171584837

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002244 IEA hematopoietic progenitor cell differentiation
GO:0008022 IPI protein C-terminus binding
GO:0016020 IDA membrane
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057583 prrc2c proline-rich coiled-coil 2C protein_coding Danio_rerio
ENSMUSG00000040225 Prrc2c proline-rich coiled-coil 2C protein_coding Mus_musculus

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