C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: proline-rich coiled-coil 2C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000040225 Prrc2c 10090 - 1:162670725-162740556 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028016 Prrc2c-006 162673402-162740550 protein_coding
  ENSMUST00000182149 Prrc2c-001 162670725-162740495 protein_coding
  ENSMUST00000182288 Prrc2c-007 162719892-162740497 retained_intron
  ENSMUST00000182308 Prrc2c-012 162722905-162724868 retained_intron
  ENSMUST00000182331 Prrc2c-011 162720545-162740350 protein_coding
  ENSMUST00000182393 Prrc2c-003 162671788-162705192 protein_coding
  ENSMUST00000182448 Prrc2c-014 162712802-162714016 retained_intron
  ENSMUST00000182535 Prrc2c-013 162683738-162688189 retained_intron
  ENSMUST00000182593 Prrc2c-005 162672889-162740481 protein_coding
  ENSMUST00000182660 Prrc2c-004 162670727-162740556 protein_coding
  ENSMUST00000183011 Prrc2c-008 162710534-162740404 protein_coding
  ENSMUST00000183223 Prrc2c-009 162671785-162704766 protein_coding
  ENSMUST00000183286 Prrc2c-010 162730257-162740487 processed_transcript

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028016ENSMUST00000182149ENSMUST00000182393ENSMUST00000182593ENSMUST00000182660ENSMUST00000183223
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028016 3.038±1.50 5.339±3.53 2.487±0.00 13.749±4.73 5.933±1.76 3.394±1.13 N/A 2.042±0.53 1.576±0.52 5.493±0.90 1.155±0.00 5.365±3.28 8.926±3.76 3.289±1.47
ENSMUST00000182149 0.888±0.00 N/A 1.159±0.00 N/A N/A N/A N/A N/A 0.766±0.02 1.849±0.00 0.838±0.04 N/A 2.931±1.27 N/A
ENSMUST00000182393 5.155±2.16 4.679±0.44 4.096±0.96 8.182±2.74 5.023±1.34 5.637±1.04 2.179±0.26 3.544±0.94 1.640±0.55 6.465±0.80 1.287±0.37 5.550±2.28 4.470±1.19 3.250±0.13
ENSMUST00000182593 2.911±0.23 N/A N/A N/A 2.445±0.00 N/A 1.199±0.00 N/A 1.230±0.00 N/A N/A 6.854±1.96 7.762±3.59 2.520±1.57
ENSMUST00000182660 N/A N/A N/A 2.451±1.27 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183223 6.223±2.02 14.472±4.74 4.050±0.19 7.302±2.39 10.253±4.08 8.171±2.75 3.576±0.94 5.067±0.57 3.168±1.19 10.267±1.91 1.638±0.29 11.999±4.81 8.519±3.56 4.394±0.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007X5 CIL_0007X5_0002 VISTA 1:162530457-163133967
CIL_0005CU CIL_0005CU_0002 CGP 1:162670725-162813972

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002244 IGI hematopoietic progenitor cell differentiation
GO:0008022 IEA protein C-terminus binding
GO:0016020 IEA membrane
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057583 prrc2c proline-rich coiled-coil 2C protein_coding Danio_rerio
ENSG00000117523 PRRC2C proline-rich coiled-coil 2C protein_coding Homo_sapiens

Loading