C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proline-rich coiled-coil 2C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000338920 PRRC2C-010 ENSG00000117523 9606 + 1:171485556-171593511 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyLiverOvaryPlacentaTestisENST00000338920
Transcript ID Kidney Liver Ovary Placenta Testis
ENST00000338920 0.718±0.00 0.405±0.00 20.121±0.00 4.894±0.00 14.245±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007X5 CIL_0007X5_0001 VISTA 1:170981906-171584837

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002244 IEA hematopoietic progenitor cell differentiation
GO:0008022 IPI protein C-terminus binding
GO:0016020 IDA membrane
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028016 Prrc2c-006 protein_coding Mus_musculus 0 3518
ENSMUST00000182593 Prrc2c-005 protein_coding Mus_musculus 0 3518
ENSMUST00000182660 Prrc2c-004 protein_coding Mus_musculus 0 3518
ENSMUST00000182149 Prrc2c-001 protein_coding Mus_musculus 0 3518
ENSMUST00000182393 Prrc2c-003 protein_coding Mus_musculus 0 2922
ENSMUST00000183223 Prrc2c-009 protein_coding Mus_musculus 0 2241
ENSMUST00000183011 Prrc2c-008 protein_coding Mus_musculus 0 1927
ENSMUST00000182288 Prrc2c-007 retained_intron Mus_musculus 0 821
ENSMUST00000182331 Prrc2c-011 protein_coding Mus_musculus 0 619
ENSMUST00000182308 Prrc2c-012 retained_intron Mus_musculus 0 438
ENSMUST00000182535 Prrc2c-013 retained_intron Mus_musculus 0 374

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