C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polypyrimidine tract binding protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000119314 PTBP3 9606 - 9:112217716-112333667 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000210227 PTBP3-001 112262505-112333029 protein_coding
  ENST00000334318 PTBP3-201 112217716-112333664 protein_coding
  ENST00000343327 PTBP3-005 112222661-112333578 protein_coding
  ENST00000374255 PTBP3-006 112222245-112333625 protein_coding
  ENST00000374257 PTBP3-004 112218435-112333667 protein_coding
  ENST00000450374 PTBP3-003 112275910-112333614 protein_coding
  ENST00000458258 PTBP3-202 112217716-112333026 protein_coding
  ENST00000487997 PTBP3-002 112262435-112333546 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000334318ENST00000374255ENST00000374257
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000334318 N/A N/A 1.009±0.00 0.853±0.00 N/A 0.228±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000374255 N/A 3.288±0.00 0.895±0.00 3.325±0.00 N/A 0.483±0.00 0.863±0.00 N/A 3.383±0.00 N/A N/A N/A N/A
ENST00000374257 1.607±0.00 3.971±0.00 1.825±0.55 1.730±1.01 0.760±0.00 1.767±0.67 2.301±0.00 0.342±0.00 4.298±0.00 1.153±0.93 8.320±10.17 6.789±4.89 7.371±1.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005X7 CIL_0005X7_0001 CGP 9:112040785-112333667
CIL_000228 CIL_000228_0002 CGP 9:112217716-112472410

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS:IEA RNA binding
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0009653 TAS anatomical structure morphogenesis
GO:0033119 IDA negative regulation of RNA splicing
GO:0043249 IEA erythrocyte maturation
GO:0044822 IDA poly(A) RNA binding
GO:0045595 IEA regulation of cell differentiation
GO:0048025 IEA negative regulation of mRNA splicing, via spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043757 ptbp3 polypyrimidine tract binding protein 3 protein_coding Danio_rerio
ENSMUSG00000028382 Ptbp3 polypyrimidine tract binding protein 3 protein_coding Mus_musculus

Loading