C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polypyrimidine tract binding protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028382 Ptbp3 10090 - 4:59471868-59549364 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030076 Ptbp3-001 59471868-59549364 protein_coding
  ENSMUST00000102883 Ptbp3-002 59475259-59549284 protein_coding
  ENSMUST00000134879 Ptbp3-003 59493189-59549257 nonsense_mediated_decay
  ENSMUST00000140925 Ptbp3-005 59517473-59548737 protein_coding
  ENSMUST00000148331 Ptbp3-006 59476648-59549314 protein_coding
  ENSMUST00000151313 Ptbp3-004 59501103-59514348 retained_intron
  ENSMUST00000172471 Ptbp3-013 59481443-59493285 protein_coding
  ENSMUST00000172768 Ptbp3-010 59476583-59548775 protein_coding
  ENSMUST00000173268 Ptbp3-012 59476935-59485772 retained_intron
  ENSMUST00000173699 Ptbp3-008 59475711-59549243 protein_coding
  ENSMUST00000173884 Ptbp3-011 59493239-59549265 protein_coding
  ENSMUST00000174586 Ptbp3-009 59472048-59549295 protein_coding
  ENSMUST00000174748 Ptbp3-007 59481448-59549252 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030076ENSMUST00000102883ENSMUST00000148331ENSMUST00000172768ENSMUST00000174586ENSMUST00000174748
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030076 7.918±1.98 3.353±0.00 6.923±1.26 3.037±1.74 7.960±2.22 6.196±2.50 2.362±0.46 7.365±2.68 8.309±4.15 9.730±2.35 0.535±0.25 5.604±2.40 25.123±9.26 1.173±0.58
ENSMUST00000102883 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.333±0.00 N/A N/A
ENSMUST00000148331 N/A 10.033±4.01 N/A N/A N/A 4.120±0.00 N/A N/A N/A N/A N/A N/A 29.361±0.00 N/A
ENSMUST00000172768 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.125±0.00
ENSMUST00000174586 6.733±1.80 6.483±1.65 4.119±0.04 1.690±0.09 6.038±1.92 9.609±1.75 1.651±0.44 3.888±2.25 7.400±4.61 8.924±2.63 0.521±0.15 12.913±4.36 19.660±2.46 1.038±0.28
ENSMUST00000174748 9.194±1.36 15.125±3.92 N/A N/A 15.994±3.15 20.616±6.02 2.390±0.00 7.981±2.13 5.652±0.59 12.091±2.01 N/A 20.063±4.58 N/A 3.358±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005X7 CIL_0005X7_0002 CGP 4:59314683-59549364
CIL_000228 CIL_000228_0003 CGP 4:59471868-59618689

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0033119 IEA negative regulation of RNA splicing
GO:0043249 IEA erythrocyte maturation
GO:0044822 IEA poly(A) RNA binding
GO:0045595 IEA regulation of cell differentiation
GO:0048025 IMP negative regulation of mRNA splicing, via spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043757 ptbp3 polypyrimidine tract binding protein 3 protein_coding Danio_rerio
ENSG00000119314 PTBP3 polypyrimidine tract binding protein 3 protein_coding Homo_sapiens

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