C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polypyrimidine tract binding protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374257 PTBP3-004 ENSG00000119314 9606 - 9:112218435-112333667 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000374257
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000374257 1.607±0.00 3.971±0.00 1.825±0.55 1.730±1.01 0.760±0.00 1.767±0.67 2.301±0.00 0.342±0.00 4.298±0.00 1.153±0.93 8.320±10.17 6.789±4.89 7.371±1.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005X7 CIL_0005X7_0001 CGP 9:112040785-112333667
CIL_000228 CIL_000228_0002 CGP 9:112217716-112472410

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS:IEA RNA binding
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0009653 TAS anatomical structure morphogenesis
GO:0033119 IDA negative regulation of RNA splicing
GO:0043249 IEA erythrocyte maturation
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030076 Ptbp3-001 protein_coding Mus_musculus 0 3199
ENSMUST00000174586 Ptbp3-009 protein_coding Mus_musculus 0 3053
ENSMUST00000102883 Ptbp3-002 protein_coding Mus_musculus 0 2996
ENSMUST00000173699 Ptbp3-008 protein_coding Mus_musculus 0 2663
ENSMUST00000148331 Ptbp3-006 protein_coding Mus_musculus 0 2383
ENSMUST00000172768 Ptbp3-010 protein_coding Mus_musculus 0 2266
ENSMUST00000174748 Ptbp3-007 nonsense_mediated_decay Mus_musculus 0 1474
ENSMUST00000173268 Ptbp3-012 retained_intron Mus_musculus 0 809
ENSMUST00000172471 Ptbp3-013 protein_coding Mus_musculus 0 715
ENSMUST00000134879 Ptbp3-003 nonsense_mediated_decay Mus_musculus 0 649
ENSMUST00000173884 Ptbp3-011 protein_coding Mus_musculus 0 573
ENSMUST00000140925 Ptbp3-005 protein_coding Mus_musculus 0 394
ENSMUST00000151313 Ptbp3-004 retained_intron Mus_musculus 0 311
ENSDART00000038648 ptbp2b-001 protein_coding Danio_rerio 2.8026e-45 189
ENSDART00000141722 ptbp2b-002 nonsense_mediated_decay Danio_rerio 3e-31 143
ENSDART00000040308 ptbp3-201 protein_coding Danio_rerio 0.000000000000004 90

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