C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear receptor subfamily 4, group A, member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000119508 NR4A3 9606 + 9:99821855-99866891 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000330847 NR4A3-003 99826727-99866891 protein_coding
  ENST00000338488 NR4A3-002 99821855-99834059 protein_coding
  ENST00000395097 NR4A3-001 99821855-99865051 protein_coding
  ENST00000618101 NR4A3-201 99821855-99866891 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000330847ENST00000338488ENST00000395097ENST00000618101
Transcript ID Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000330847 N/A 0.525±0.00 0.827±0.35 0.398±0.00 N/A 0.026±0.00 N/A N/A 7.094±6.63 0.191±0.07 0.280±0.00
ENST00000338488 2.465±0.00 0.996±0.00 N/A 0.472±0.00 0.528±0.00 2.060±0.00 N/A 8.059±0.00 N/A N/A N/A
ENST00000395097 0.731±0.00 N/A N/A N/A 3.815±0.00 N/A 0.719±0.00 7.099±0.00 3.932±2.84 0.163±0.03 0.791±0.00
ENST00000618101 N/A 0.377±0.00 0.298±0.00 0.362±0.00 6.644±0.00 0.060±0.00 14.244±0.00 N/A N/A 0.542±0.24 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007HI CIL_0007HI_0002 CGP 9:99222064-99866891
CIL_0007H8 CIL_0007H8_0002 CGP 9:99821855-99970341

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001707 IEA mesoderm formation
GO:0003677 NAS DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0004887 TAS thyroid hormone receptor activity
GO:0005515 IPI protein binding
GO:0005634 NAS:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005667 IEA transcription factor complex
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0007411 IEA axon guidance
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0010467 TAS gene expression
GO:0021766 IEA hippocampus development
GO:0030522 IEA intracellular receptor signaling pathway
GO:0030534 IEA adult behavior
GO:0031100 IEA organ regeneration
GO:0042472 IEA inner ear morphogenesis
GO:0042542 IEA response to hydrogen peroxide
GO:0043066 IEA negative regulation of apoptotic process
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043434 IEA response to peptide hormone
GO:0043524 IEA negative regulation of neuron apoptotic process
GO:0043565 IEA sequence-specific DNA binding
GO:0045787 IEA positive regulation of cell cycle
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048752 IEA semicircular canal morphogenesis
GO:0050885 IEA neuromuscular process controlling balance
GO:0060005 IEA vestibular reflex
GO:2000108 IEA positive regulation of leukocyte apoptotic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055854 nr4a3 nuclear receptor subfamily 4, group A, member 3 protein_coding Danio_rerio
ENSMUSG00000028341 Nr4a3 nuclear receptor subfamily 4, group A, member 3 protein_coding Mus_musculus

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