C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor subfamily 4, group A, member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000330847 NR4A3-003 ENSG00000119508 9606 + 9:99826727-99866891 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonLiverOvaryPlacentaTestisENST00000330847
Transcript ID Brain Breast Colon Liver Ovary Placenta Testis
ENST00000330847 0.525±0.00 0.827±0.35 0.398±0.00 0.026±0.00 7.094±6.63 0.191±0.07 0.280±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007HI CIL_0007HI_0002 CGP 9:99222064-99866891
CIL_0007H8 CIL_0007H8_0002 CGP 9:99821855-99970341

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 NAS DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0004887 TAS thyroid hormone receptor activity
GO:0005515 IPI protein binding
GO:0005634 NAS:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0010467 TAS gene expression
GO:0030522 IEA intracellular receptor signaling pathway
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000153369 Nr4a3-004 protein_coding Mus_musculus 0 2643
ENSMUST00000030025 Nr4a3-001 protein_coding Mus_musculus 0 2534
ENSMUST00000133539 Nr4a3-003 processed_transcript Mus_musculus 0 1338
ENSDART00000009755 rxrba-201 protein_coding Danio_rerio 0.00009 55
ENSDART00000112245 rxrba-202 protein_coding Danio_rerio 0.00009 55
ENSDART00000147429 rxrba-007 protein_coding Danio_rerio 0.00009 55
ENSDART00000132887 rxrba-005 protein_coding Danio_rerio 0.00009 55
ENSDART00000102075 rxrba-004 protein_coding Danio_rerio 0.00009 55
ENSDART00000136528 rxrba-003 protein_coding Danio_rerio 0.00009 55

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