C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: 3-ketodihydrosphingosine reductase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000119537 KDSR 9606 - 18:63327726-63367510 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000326575 KDSR-010 63331651-63367204 protein_coding
  ENST00000406396 KDSR-001 63327726-63367510 protein_coding
  ENST00000585456 KDSR-006 63359525-63367128 retained_intron
  ENST00000585750 KDSR-007 63344342-63355514 retained_intron
  ENST00000586791 KDSR-002 63330825-63346530 retained_intron
  ENST00000587292 KDSR-005 63362843-63367206 processed_transcript
  ENST00000588089 KDSR-011 63331404-63336023 retained_intron
  ENST00000589530 KDSR-008 63355316-63367203 retained_intron
  ENST00000589592 KDSR-012 63331643-63346616 processed_transcript
  ENST00000590056 KDSR-004 63366431-63367228 processed_transcript
  ENST00000591902 KDSR-009 63331383-63355533 protein_coding
  ENST00000592327 KDSR-013 63351015-63367204 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000406396ENST00000586791ENST00000591902
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000406396 10.344±0.00 4.706±0.00 1.647±0.00 4.442±1.79 5.221±1.98 9.092±0.00 2.041±1.14 6.047±1.70 4.975±1.40 3.485±1.68 1.478±1.09 4.716±2.55 3.610±1.27 3.894±2.68
ENST00000586791 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.098±0.00 N/A N/A N/A N/A
ENST00000591902 19.997±0.00 6.516±0.00 2.094±0.00 15.998±0.00 14.647±0.00 12.245±9.10 5.075±3.52 7.954±3.92 7.284±2.17 7.038±3.75 7.294±0.00 6.778±1.96 9.157±1.16 6.278±2.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000B4 CIL_0000B4_0002 CGP 18:63123346-63367510
CIL_0000B7 CIL_0000B7_0002 CGP 18:63327726-63422483

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005615 TAS extracellular space
GO:0005783 IDA endoplasmic reticulum
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006665 TAS sphingolipid metabolic process
GO:0006666 IDA 3-keto-sphinganine metabolic process
GO:0008152 IEA metabolic process
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016491 IEA oxidoreductase activity
GO:0030148 TAS sphingolipid biosynthetic process
GO:0044281 TAS small molecule metabolic process
GO:0047560 IDA 3-dehydrosphinganine reductase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012021 kdsr 3-ketodihydrosphingosine reductase protein_coding Danio_rerio
ENSMUSG00000009905 Kdsr 3-ketodihydrosphingosine reductase protein_coding Mus_musculus

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