C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: 3-ketodihydrosphingosine reductase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000406396 KDSR-001 ENSG00000119537 9606 - 18:63327726-63367510 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000406396
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000406396 10.344±0.00 4.706±0.00 1.647±0.00 4.442±1.79 5.221±1.98 9.092±0.00 2.041±1.14 6.047±1.70 4.975±1.40 3.485±1.68 1.478±1.09 4.716±2.55 3.610±1.27 3.894±2.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000B4 CIL_0000B4_0002 CGP 18:63123346-63367510
CIL_0000B7 CIL_0000B7_0002 CGP 18:63327726-63422483

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005615 TAS extracellular space
GO:0005783 IDA endoplasmic reticulum
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006665 TAS sphingolipid metabolic process
GO:0006666 IDA 3-keto-sphinganine metabolic process
GO:0008152 IEA metabolic process
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016491 IEA oxidoreductase activity
GO:0030148 TAS sphingolipid biosynthetic process
GO:0044281 TAS small molecule metabolic process
GO:0047560 IDA 3-dehydrosphinganine reductase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000010049 Kdsr-001 protein_coding Mus_musculus 0 1299
ENSMUST00000187319 Kdsr-002 retained_intron Mus_musculus 0 422
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.00000005 66

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