C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: 3-ketodihydrosphingosine reductase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000009905 Kdsr 10090 - 1:106720459-106759727 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000010049 Kdsr-001 106720459-106759727 protein_coding
  ENSMUST00000187319 Kdsr-002 106747500-106759699 retained_intron
  ENSMUST00000187617 Kdsr-003 106757102-106759683 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000010049ENSMUST00000187319
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000010049 8.669±1.16 9.934±1.56 7.546±0.45 2.440±0.68 5.941±0.82 4.727±0.50 1.286±0.32 4.707±0.45 3.031±1.50 6.844±0.39 0.601±0.13 4.189±1.42 6.211±2.84 0.782±0.44
ENSMUST00000187319 16.245±0.00 47.232±14.36 N/A 6.294±0.00 15.984±4.55 12.468±2.16 N/A 5.841±0.69 5.920±0.99 10.624±1.30 N/A 17.204±4.49 32.476±12.35 1.471±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000B4 CIL_0000B4_0003 CGP 1:106538178-106759727
CIL_0000B7 CIL_0000B7_0003 CGP 1:106720459-106796728

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005783 ISO endoplasmic reticulum
GO:0006666 ISO 3-keto-sphinganine metabolic process
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030148 IGI sphingolipid biosynthetic process
GO:0047560 ISO 3-dehydrosphinganine reductase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012021 kdsr 3-ketodihydrosphingosine reductase protein_coding Danio_rerio
ENSG00000119537 KDSR 3-ketodihydrosphingosine reductase protein_coding Homo_sapiens

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