C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0000B7_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000012021-ENSDARG00000069175 CGP 7955 2:13015744-13060553
GeneTranscriptPositionBiotype
ENSDARG00000012021 (kdsr)
3-ketodihydrosphingosine reductase
ENSDART00000022621 (kdsr-001) 13015744-13046810 protein_coding
ENSDART00000155671 (kdsr-003) 13017009-13046583 protein_coding
ENSDART00000156573 (kdsr-002) 13044141-13046786 processed_transcript
ENSDARG00000069175 (vps4b)
vacuolar protein sorting 4b (yeast)
ENSDART00000079757 (vps4b-001) 13047975-13060553 protein_coding
ENSDART00000127693 (vps4b-002) 13047975-13060545 protein_coding
CIL_0000B7_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000119537-ENSG00000119541 CGP 9606 18:63327726-63422483
GeneTranscriptPositionBiotype
ENSG00000119541 (VPS4B)
vacuolar protein sorting 4 homolog B (S. cerevisiae)
ENST00000238497 (VPS4B-001) 63389190-63422463 protein_coding
ENST00000588059 (VPS4B-004) 63393444-63422463 nonsense_mediated_decay
ENST00000588323 (VPS4B-008) 63390863-63397124 processed_transcript
ENST00000589604 (VPS4B-005) 63396590-63422463 retained_intron
ENST00000591383 (VPS4B-007) 63399255-63404714 processed_transcript
ENST00000591475 (VPS4B-006) 63396342-63422483 retained_intron
ENST00000591519 (VPS4B-003) 63407376-63422390 protein_coding
ENSG00000267390 (RP11-635N19.1)
ENST00000589905 (RP11-635N19.1-001) 63367328-63381629 antisense
ENSG00000267430 (RP11-635N19.2)
ENST00000589763 (RP11-635N19.2-001) 63415317-63416469 processed_pseudogene
CIL_0000B7_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000009905-ENSMUSG00000009907 CGP 10090 1:106720459-106796728
GeneTranscriptPositionBiotype
ENSMUSG00000009905 (Kdsr)
3-ketodihydrosphingosine reductase
ENSMUST00000010049 (Kdsr-001) 106720459-106759727 protein_coding
ENSMUST00000187319 (Kdsr-002) 106747500-106759699 retained_intron
ENSMUST00000187617 (Kdsr-003) 106757102-106759683 retained_intron
ENSMUSG00000009907 (Vps4b)
vacuolar protein sorting 4b (yeast)
ENSMUST00000094646 (Vps4b-001) 106769430-106796728 protein_coding
ENSMUST00000112736 (Vps4b-002) 106764071-106796667 protein_coding
ENSMUST00000126057 (Vps4b-003) 106791100-106796577 retained_intron
ENSMUST00000127606 (Vps4b-004) 106785804-106789949 processed_transcript
ENSMUST00000147705 (Vps4b-005) 106777298-106782794 retained_intron
ENSMUST00000190531 (Vps4b-006) 106779441-106780624 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000B7_0001ENSDARG00000012021ENSDART00000022621ENSDART00000155671ENSDART00000156573ENSDARG00000069175ENSDART00000079757ENSDART00000127693CIL_0000B7_0002ENSG00000119541ENST00000238497ENST00000588059ENST00000588323ENST00000589604ENST00000591383ENST00000591475ENST00000591519ENSG00000267390ENST00000589905ENSG00000267430ENST00000589763CIL_0000B7_0003ENSMUSG00000009905ENSMUST00000010049ENSMUST00000187319ENSMUST00000187617ENSMUSG00000009907ENSMUST00000094646ENSMUST00000112736ENSMUST00000126057ENSMUST00000127606ENSMUST00000147705ENSMUST00000190531
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000B7_0001ENSDARG00000012021ENSDART00000022621ENSDART00000155671ENSDARG00000069175ENSDART00000079757ENSDART00000127693CIL_0000B7_0002ENSG00000119541ENST00000238497ENST00000588059ENST00000589604ENST00000591383ENST00000591475ENST00000591519ENSG00000267390ENST00000589905ENSG00000267430ENST00000589763CIL_0000B7_0003ENSMUSG00000009905ENSMUST00000010049ENSMUST00000187319ENSMUSG00000009907ENSMUST00000094646ENSMUST00000112736ENSMUST00000147705
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000012021 ENSDART00000022621 N/A N/A N/A 11.996±0.53 N/A N/A 3.578±1.71 5.685±0.00 2.251±0.00 N/A 1.584±0.00 N/A N/A N/A
ENSDART00000155671 N/A N/A N/A N/A N/A N/A 2.451±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000156573 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000069175 ENSDART00000079757 N/A N/A N/A 5.115±2.36 N/A N/A 18.998±1.40 25.940±1.75 0.615±0.00 N/A 1.115±0.00 N/A N/A N/A
ENSDART00000127693 N/A N/A N/A 13.581±2.51 N/A N/A 20.208±0.23 20.170±0.00 1.886±0.00 N/A 6.833±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000119541 ENST00000238497 11.535±0.00 9.086±0.00 1.307±0.00 7.002±3.27 8.385±3.49 4.429±1.37 2.226±1.72 8.911±3.33 3.793±0.00 5.001±0.01 0.585±0.07 6.681±2.61 11.752±2.32 8.450±2.18
ENST00000588059 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.285±0.00 N/A N/A N/A
ENST00000588323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589604 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.312±0.00
ENST00000591383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.471±0.00 20.865±0.00 16.929±0.00
ENST00000591475 N/A N/A 1.256±0.00 N/A N/A N/A 0.618±0.00 N/A N/A 1.460±0.00 0.189±0.00 N/A N/A N/A
ENST00000591519 N/A N/A 3.105±0.00 N/A 7.992±0.00 N/A N/A N/A N/A 5.814±0.00 1.460±0.00 7.491±0.00 N/A N/A
ENSG00000267390 ENST00000589905 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.861±0.00 N/A N/A N/A
ENSG00000267430 ENST00000589763 0.086±0.00 0.197±0.00 0.388±0.00 0.042±0.00 0.209±0.06 0.748±0.00 0.064±0.01 0.141±0.11 0.367±0.00 0.668±0.00 N/A 0.138±0.17 0.060±0.00 0.064±0.04
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000009905 ENSMUST00000010049 8.669±1.16 9.934±1.56 7.546±0.45 2.440±0.68 5.941±0.82 4.727±0.50 1.286±0.32 4.707±0.45 3.031±1.50 6.844±0.39 0.601±0.13 4.189±1.42 6.211±2.84 0.782±0.44
ENSMUST00000187319 16.245±0.00 47.232±14.36 N/A 6.294±0.00 15.984±4.55 12.468±2.16 N/A 5.841±0.69 5.920±0.99 10.624±1.30 N/A 17.204±4.49 32.476±12.35 1.471±0.34
ENSMUST00000187617 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000009907 ENSMUST00000094646 9.149±2.84 28.387±17.90 17.290±2.44 5.239±1.65 12.201±5.18 22.342±7.80 3.307±0.24 9.858±1.26 8.806±2.48 14.247±2.44 2.933±0.23 20.277±5.89 9.742±3.41 3.353±0.92
ENSMUST00000112736 N/A N/A N/A N/A 1.316±0.00 2.419±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126057 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127606 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147705 N/A N/A N/A 17.872±0.00 N/A N/A N/A N/A N/A N/A 4.126±0.56 40.655±3.49 30.857±8.44 12.075±0.00
ENSMUST00000190531 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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