C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: YLP motif containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000119596 YLPM1 9606 + 14:74763366-74859435 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000325680 YLPM1-001 74763366-74836281 protein_coding
  ENST00000546901 YLPM1-006 74818309-74828032 processed_transcript
  ENST00000547879 YLPM1-003 74809632-74822115 protein_coding
  ENST00000549197 YLPM1-005 74834898-74837309 retained_intron
  ENST00000549293 YLPM1-002 74781385-74836190 nonsense_mediated_decay
  ENST00000550021 YLPM1-007 74823978-74829289 retained_intron
  ENST00000552421 YLPM1-008 74763366-74836190 protein_coding
  ENST00000553381 YLPM1-011 74844024-74855675 processed_transcript
  ENST00000554107 YLPM1-010 74817238-74859435 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000325680ENST00000547879ENST00000549293ENST00000552421ENST00000554107
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000325680 7.305±0.00 3.399±0.00 1.126±0.00 4.765±3.76 N/A 2.020±0.46 2.064±1.30 2.043±0.00 2.842±0.00 0.977±0.00 3.378±0.00 12.319±10.73 2.934±1.00 19.969±9.50
ENST00000547879 N/A N/A N/A 2.556±0.00 5.420±0.00 4.425±0.00 N/A 1.027±0.00 N/A 4.140±0.00 0.957±0.00 N/A N/A N/A
ENST00000549293 4.190±0.00 5.994±0.00 1.073±0.00 5.014±2.14 3.281±1.64 2.929±1.54 1.816±0.21 3.882±3.42 3.067±0.76 1.866±0.63 3.606±2.55 5.280±1.36 2.213±0.80 12.285±0.80
ENST00000552421 N/A 3.739±0.00 2.048±0.00 3.797±0.00 N/A 3.296±0.00 0.997±0.27 2.931±1.20 2.168±0.47 1.552±0.20 1.625±0.93 3.667±1.18 3.627±2.74 5.065±0.00
ENST00000554107 N/A N/A N/A N/A 2.514±0.00 N/A N/A N/A N/A 1.008±0.00 N/A 2.416±0.00 1.296±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005AX CIL_0005AX_0001 CGP 14:74713144-74859435
CIL_0003U2 CIL_0003U2_0001 CGP 14:74763366-74871940

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0001078 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003873 IEA 6-phosphofructo-2-kinase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006000 IEA fructose metabolic process
GO:0006351 IEA transcription, DNA-templated
GO:0008150 ND biological_process
GO:0032204 IEA regulation of telomere maintenance
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043680 ylpm1 YLP motif containing 1 protein_coding Danio_rerio
ENSMUSG00000021244 Ylpm1 YLP motif containing 1 protein_coding Mus_musculus

Loading