C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: YLP motif containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021244 Ylpm1 10090 + 12:84996321-85070515 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021670 Ylpm1-001 84996352-85070515 protein_coding
  ENSMUST00000101202 Ylpm1-201 84996490-85070514 protein_coding
  ENSMUST00000164558 Ylpm1-002 85014701-85070492 nonsense_mediated_decay
  ENSMUST00000165803 Ylpm1-007 85049690-85050621 retained_intron
  ENSMUST00000166605 Ylpm1-005 85064679-85070415 retained_intron
  ENSMUST00000167838 Ylpm1-006 85059960-85070249 retained_intron
  ENSMUST00000168977 Ylpm1-004 84996321-85070492 protein_coding
  ENSMUST00000169150 Ylpm1-003 85042227-85059336 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021670ENSMUST00000101202ENSMUST00000164558ENSMUST00000168977
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021670 1.560±1.00 1.199±0.00 3.893±1.45 11.987±6.60 0.995±0.24 0.715±0.11 1.599±0.39 1.573±0.18 1.591±0.94 1.194±0.34 1.152±0.42 3.947±6.02 4.333±2.93 10.188±5.36
ENSMUST00000101202 N/A N/A N/A N/A N/A 0.992±0.00 N/A N/A N/A N/A N/A N/A 4.255±0.06 N/A
ENSMUST00000164558 N/A N/A 2.200±0.60 20.837±0.00 N/A N/A N/A N/A 0.697±0.25 N/A 0.636±0.11 8.661±5.61 5.509±4.94 26.669±0.00
ENSMUST00000168977 1.694±0.49 4.990±0.00 N/A 3.587±0.61 2.411±1.07 2.128±1.16 1.232±0.29 1.714±1.13 1.263±0.49 3.259±0.23 0.622±0.14 2.071±1.34 2.506±1.31 7.317±2.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005AX CIL_0005AX_0002 CGP 12:84970897-85070515
CIL_0003U2 CIL_0003U2_0002 CGP 12:84996321-85106431

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001078 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0032204 IDA regulation of telomere maintenance
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043680 ylpm1 YLP motif containing 1 protein_coding Danio_rerio
ENSG00000119596 YLPM1 YLP motif containing 1 protein_coding Homo_sapiens

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