C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: YLP motif containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000325680 YLPM1-001 ENSG00000119596 9606 + 14:74763366-74836281 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000325680
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000325680 7.305±0.00 3.399±0.00 1.126±0.00 4.765±3.76 2.020±0.46 2.064±1.30 2.043±0.00 2.842±0.00 0.977±0.00 3.378±0.00 12.319±10.73 2.934±1.00 19.969±9.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005AX CIL_0005AX_0001 CGP 14:74713144-74859435
CIL_0003U2 CIL_0003U2_0001 CGP 14:74763366-74871940

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0001078 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008150 ND biological_process
GO:0032204 IEA regulation of telomere maintenance
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021670 Ylpm1-001 protein_coding Mus_musculus 0 6687
ENSMUST00000164558 Ylpm1-002 nonsense_mediated_decay Mus_musculus 0 5624
ENSMUST00000101202 Ylpm1-201 protein_coding Mus_musculus 0 2990
ENSMUST00000168977 Ylpm1-004 protein_coding Mus_musculus 0 2964
ENSMUST00000169150 Ylpm1-003 retained_intron Mus_musculus 0 1254
ENSMUST00000166605 Ylpm1-005 retained_intron Mus_musculus 0 628
ENSMUST00000167838 Ylpm1-006 retained_intron Mus_musculus 0 617
ENSMUST00000165803 Ylpm1-007 retained_intron Mus_musculus 0 490
ENSDART00000064140 ylpm1-201 protein_coding Danio_rerio 0 449
ENSDART00000133012 ylpm1-001 protein_coding Danio_rerio 0 449

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