C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: estrogen-related receptor beta
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000119715 ESRRB 9606 + 14:76310614-76501841 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000380887 ESRRB-003 76404429-76501841 protein_coding
  ENST00000505752 ESRRB-001 76371144-76500865 nonsense_mediated_decay
  ENST00000507951 ESRRB-005 76376357-76482129 processed_transcript
  ENST00000509242 ESRRB-201 76407402-76501835 protein_coding
  ENST00000509323 ESRRB-004 76439642-76463427 processed_transcript
  ENST00000512784 ESRRB-002 76310614-76500704 protein_coding
  ENST00000556177 ESRRB-006 76407538-76498511 protein_coding
  ENST00000611036 ESRRB-007 76499646-76501835 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000380887ENST00000505752ENST00000507951ENST00000512784ENST00000556177ENST00000611036
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000380887 N/A N/A N/A N/A 0.050±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505752 N/A N/A N/A N/A 0.115±0.00 N/A N/A 0.057±0.00 N/A N/A N/A N/A 0.190±0.00
ENST00000507951 N/A N/A N/A N/A N/A 0.237±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000512784 N/A 0.128±0.00 4.170±0.00 N/A N/A N/A N/A N/A 0.040±0.00 N/A 0.104±0.00 0.053±0.00 0.522±0.00
ENST00000556177 0.055±0.00 N/A N/A 0.167±0.00 N/A N/A N/A N/A 0.036±0.00 1.300±0.42 0.032±0.01 N/A 0.645±0.00
ENST00000611036 0.122±0.00 0.196±0.00 1.497±0.00 0.032±0.02 0.133±0.06 N/A 1.596±0.00 4.408±0.00 N/A 0.361±0.11 0.023±0.01 0.061±0.03 0.256±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007M1 CIL_0007M1_0001 UCNEbase 14:76034985-76675411
CIL_0005O2 CIL_0005O2_0001 CGP 14:76151916-76501841
CIL_0003P4 CIL_0003P4_0001 CGP 14:76310614-76783015

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000980 ISS RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001701 IEA in utero embryonic development
GO:0001831 IEA trophectodermal cellular morphogenesis
GO:0001834 IEA trophectodermal cell proliferation
GO:0001892 IEA embryonic placenta development
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0003713 ISS transcription coactivator activity
GO:0004879 TAS ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005496 IEA steroid binding
GO:0005515 IEA protein binding
GO:0005634 ISS:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA:IEA regulation of transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0008134 ISS transcription factor binding
GO:0008270 IEA zinc ion binding
GO:0010467 TAS gene expression
GO:0019827 IEA stem cell maintenance
GO:0030522 TAS intracellular receptor signaling pathway
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IDA:IEA sequence-specific DNA binding
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040151 esrrb estrogen-related receptor beta protein_coding Danio_rerio
ENSMUSG00000021255 Esrrb estrogen related receptor, beta protein_coding Mus_musculus

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