C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: estrogen-related receptor beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000556177 ESRRB-006 ENSG00000119715 9606 + 14:76407538-76498511 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainLiverMuscleOvaryTestisENST00000556177
Transcript ID Adipose Brain Liver Muscle Ovary Testis
ENST00000556177 0.055±0.00 0.167±0.00 0.036±0.00 1.300±0.42 0.032±0.01 0.645±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007M1 CIL_0007M1_0001 UCNEbase 14:76034985-76675411
CIL_0005O2 CIL_0005O2_0001 CGP 14:76151916-76501841
CIL_0003P4 CIL_0003P4_0001 CGP 14:76310614-76783015

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000980 ISS RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0003713 ISS transcription coactivator activity
GO:0004879 TAS ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005496 IEA steroid binding
GO:0005634 ISS:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006355 IDA:IEA regulation of transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0008134 ISS transcription factor binding
GO:0008270 IEA zinc ion binding
GO:0010467 TAS gene expression
GO:0030522 TAS intracellular receptor signaling pathway
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IDA:IEA sequence-specific DNA binding
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021680 Esrrb-006 protein_coding Mus_musculus 0 1637
ENSMUST00000110204 Esrrb-002 protein_coding Mus_musculus 0 1635
ENSMUST00000116402 Esrrb-001 protein_coding Mus_musculus 0 1635
ENSMUST00000167891 Esrrb-005 protein_coding Mus_musculus 0 1616
ENSMUST00000110203 Esrrb-003 protein_coding Mus_musculus 0 1308
ENSDART00000007600 esrrb-201 protein_coding Danio_rerio 0 863
ENSDART00000009104 esrrga-001 protein_coding Danio_rerio 0 785
ENSDART00000126966 esrrga-201 protein_coding Danio_rerio 0 699
ENSDART00000100658 esrra-201 protein_coding Danio_rerio 9e-25 119
ENSDART00000125432 esrrd-201 protein_coding Danio_rerio 5e-17 94

Loading