C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: retinol dehydrogenase 10 (all-trans)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000121039 RDH10 9606 + 8:73294612-73325281 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000240285 RDH10-001 73294612-73325281 protein_coding
  ENST00000518870 RDH10-003 73295516-73297740 retained_intron
  ENST00000519380 RDH10-002 73297016-73323099 protein_coding
  ENST00000521013 RDH10-005 73321840-73323308 retained_intron
  ENST00000521928 RDH10-004 73295839-73320988 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000240285ENST00000518870ENST00000519380
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000240285 10.348±0.00 2.819±0.00 4.918±0.00 1.567±0.63 5.472±3.82 3.986±0.95 1.372±0.84 10.367±6.39 4.760±1.33 5.532±2.48 0.358±0.08 5.866±3.85 7.386±4.58 3.083±0.08
ENST00000518870 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.574±0.00 N/A N/A N/A
ENST00000519380 N/A N/A 6.889±0.00 N/A 3.104±0.00 5.034±0.00 1.088±0.00 11.127±0.00 6.605±0.00 3.402±0.00 N/A 8.697±0.00 N/A 2.804±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00011X CIL_00011X_0001 CGP 8:73241329-73295789
CIL_0005C3 CIL_0005C3_0002 CGP 8:73290267-73325281
CIL_0001D6 CIL_0001D6_0001 CGP 8:73294612-73747708

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001523 TAS retinoid metabolic process
GO:0001656 IEA metanephros development
GO:0001701 IEA in utero embryonic development
GO:0002138 IEA retinoic acid biosynthetic process
GO:0004745 IDA retinol dehydrogenase activity
GO:0005737 IDA cytoplasm
GO:0005789 TAS endoplasmic reticulum membrane
GO:0007601 IDA visual perception
GO:0007603 TAS phototransduction, visible light
GO:0008152 IEA metabolic process
GO:0008406 IEA gonad development
GO:0009887 IEA organ morphogenesis
GO:0014032 IEA neural crest cell development
GO:0016020 IEA membrane
GO:0016021 IDA integral component of membrane
GO:0016491 IEA oxidoreductase activity
GO:0031076 IEA embryonic camera-type eye development
GO:0035115 IEA embryonic forelimb morphogenesis
GO:0042572 IEA retinol metabolic process
GO:0042574 IDA retinal metabolic process
GO:0043583 IEA ear development
GO:0043584 IEA nose development
GO:0044297 IEA cell body
GO:0048568 IEA embryonic organ development
GO:0048703 IEA embryonic viscerocranium morphogenesis
GO:0052650 IEA NADP-retinol dehydrogenase activity
GO:0055114 IEA oxidation-reduction process
GO:0060431 IEA primary lung bud formation
GO:0060449 IEA bud elongation involved in lung branching

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012369 rdh10b retinol dehydrogenase 10b protein_coding Danio_rerio
ENSDARG00000058730 rdh10a retinol dehydrogenase 10a protein_coding Danio_rerio
ENSMUSG00000025921 Rdh10 retinol dehydrogenase 10 (all-trans) protein_coding Mus_musculus

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