C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00011X_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000274443-ENSG00000147604 CGP 9606 8:73241329-73295789
GeneTranscriptPositionBiotype
ENSG00000121039 (RDH10)
retinol dehydrogenase 10 (all-trans) 		ENST00000240285 (RDH10-001) 73294612-73325281 protein_coding
ENST00000518870 (RDH10-003) 73295516-73297740 retained_intron
ENST00000519380 (RDH10-002) 73297016-73323099 protein_coding
ENST00000521013 (RDH10-005) 73321840-73323308 retained_intron
ENST00000521928 (RDH10-004) 73295839-73320988 protein_coding
ENSG00000147604 (RPL7)
ribosomal protein L7 		ENST00000352983 (RPL7-001) 73290639-73293898 protein_coding
ENST00000396465 (RPL7-003) 73291042-73294438 protein_coding
ENST00000396466 (RPL7-004) 73291040-73295789 protein_coding
ENST00000396467 (RPL7-002) 73290284-73293633 protein_coding
ENST00000431653 (RPL7-005) 73291816-73293342 protein_coding
ENST00000435330 (RPL7-006) 73291783-73292922 protein_coding
ENST00000466821 (RPL7-007) 73291114-73291903 retained_intron
ENST00000487500 (RPL7-008) 73290267-73291137 processed_transcript
ENSG00000222334 (AC008598.1)
 ENST00000410402 (AC008598.1-201) 73273105-73273182 miRNA
ENSG00000254213 (RP11-434I12.5)
 ENST00000521579 (RP11-434I12.5-001) 73277364-73278046 processed_pseudogene
ENSG00000274443 (RP11-956J14.3)
chromosome 8 open reading frame 89 		ENST00000613105 (RP11-956J14.3-002) 73241424-73259502 protein_coding
ENST00000624510 (RP11-956J14.3-001) 73241329-73259502 protein_coding
ENST00000625134 (RP11-956J14.3-003) 73241424-73259502 protein_coding

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Structures from Ensembl
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CIL_00011X_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000067795-ENSMUSG00000043716 CGP 10090 1:16065979-16104662
GeneTranscriptPositionBiotype
ENSMUSG00000043716 (Rpl7)
ribosomal protein L7 		ENSMUST00000058437 (Rpl7-001) 16101295-16104662 protein_coding
ENSMUST00000125005 (Rpl7-004) 16102491-16104384 retained_intron
ENSMUST00000140597 (Rpl7-006) 16101295-16102082 processed_transcript
ENSMUST00000141217 (Rpl7-002) 16101306-16104402 retained_intron
ENSMUST00000149566 (Rpl7-003) 16101780-16104227 protein_coding
ENSMUST00000151017 (Rpl7-005) 16101528-16102848 retained_intron
ENSMUSG00000067795 (4930444P10Rik)
RIKEN cDNA 4930444P10 gene 		ENSMUST00000115367 (4930444P10Rik-003) 16065979-16081212 protein_coding
ENSMUST00000145070 (4930444P10Rik-001) 16065979-16093325 protein_coding
ENSMUST00000151004 (4930444P10Rik-002) 16065979-16093325 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00011X_0001ENSG00000121039ENST00000240285ENST00000518870ENST00000519380ENST00000521013ENST00000521928ENSG00000147604ENST00000352983ENST00000396465ENST00000396466ENST00000396467ENST00000431653ENST00000435330ENST00000466821ENST00000487500ENSG00000222334ENST00000410402ENSG00000254213ENST00000521579ENSG00000274443ENST00000613105ENST00000624510ENST00000625134CIL_00011X_0002ENSMUSG00000043716ENSMUST00000058437ENSMUST00000125005ENSMUST00000140597ENSMUST00000141217ENSMUST00000149566ENSMUST00000151017ENSMUSG00000067795ENSMUST00000115367ENSMUST00000145070ENSMUST00000151004
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00011X_0001ENSG00000121039ENST00000240285ENST00000518870ENST00000519380ENSG00000147604ENST00000352983ENST00000396466ENST00000435330ENSG00000222334ENST00000410402ENSG00000254213ENST00000521579ENSG00000274443ENST00000613105ENST00000624510ENST00000625134CIL_00011X_0002ENSMUSG00000043716ENSMUST00000058437ENSMUST00000125005ENSMUST00000140597ENSMUST00000149566ENSMUSG00000067795ENSMUST00000115367ENSMUST00000145070ENSMUST00000151004
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000121039 ENST00000240285 10.348±0.00 2.819±0.00 4.918±0.00 1.567±0.63 5.472±3.82 3.986±0.95 1.372±0.84 10.367±6.39 4.760±1.33 5.532±2.48 0.358±0.08 5.866±3.85 7.386±4.58 3.083±0.08
ENST00000518870 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.574±0.00 N/A N/A N/A
ENST00000519380 N/A N/A 6.889±0.00 N/A 3.104±0.00 5.034±0.00 1.088±0.00 11.127±0.00 6.605±0.00 3.402±0.00 N/A 8.697±0.00 N/A 2.804±0.00
ENST00000521013 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521928 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000147604 ENST00000352983 221.373±0.00 75.937±0.00 59.695±0.00 67.760±22.77 187.985±39.75 188.645±43.08 49.797±15.62 87.963±9.01 108.695±84.91 114.249±28.94 106.180±0.00 361.670±174.84 147.630±139.01 172.716±6.20
ENST00000396465 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000396466 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1148.260±0.00 177.908±3.24 N/A
ENST00000396467 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000431653 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000435330 N/A N/A N/A 37.217±0.00 70.838±0.00 93.401±0.00 31.491±0.00 86.050±0.00 106.480±0.00 46.047±0.00 N/A 340.800±0.00 N/A N/A
ENST00000466821 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487500 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000222334 ENST00000410402 N/A N/A N/A 0.522±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000254213 ENST00000521579 0.219±0.00 N/A N/A 0.074±0.00 0.047±0.00 N/A N/A 0.023±0.00 0.363±0.00 N/A N/A 0.085±0.03 N/A 0.231±0.19
ENSG00000274443 ENST00000613105 N/A N/A N/A N/A 0.071±0.00 N/A N/A N/A 0.048±0.00 N/A N/A 0.190±0.00 0.305±0.00 3.280±0.00
ENST00000624510 0.147±0.00 N/A N/A N/A 0.088±0.00 N/A N/A N/A N/A N/A N/A 0.189±0.12 0.058±0.00 5.281±3.33
ENST00000625134 N/A N/A N/A N/A 0.287±0.00 0.020±0.00 N/A N/A 0.049±0.00 N/A N/A 0.093±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000043716 ENSMUST00000058437 103.218±50.10 7.914±0.95 443.342±22.61 125.589±70.65 48.451±12.84 52.905±15.43 12.554±0.00 42.668±12.68 283.569±216.79 76.090±0.00 85.849±17.78 69.003±13.51 249.326±187.13 15.372±8.95
ENSMUST00000125005 N/A 31.038±6.97 N/A N/A 34.061±0.72 38.693±9.47 N/A N/A 25.648±0.00 N/A N/A 108.386±27.59 N/A N/A
ENSMUST00000140597 N/A N/A N/A 50.430±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141217 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149566 93.496±64.54 15.628±1.56 282.205±31.73 137.887±46.22 147.791±71.47 90.734±7.15 56.224±7.32 105.660±21.01 173.642±142.33 99.590±17.11 41.558±7.67 229.311±144.04 261.609±169.07 40.324±5.86
ENSMUST00000151017 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000067795 ENSMUST00000115367 0.063±0.00 N/A 0.025±0.00 N/A N/A N/A 0.079±0.00 N/A N/A N/A N/A 0.232±0.07 0.049±0.06 N/A
ENSMUST00000145070 0.083±0.02 0.160±0.03 0.010±0.00 0.521±0.00 0.127±0.03 0.115±0.03 0.083±0.05 0.082±0.05 0.119±0.10 0.120±0.03 N/A 0.835±0.48 0.055±0.04 4.148±1.43
ENSMUST00000151004 N/A 0.078±0.03 N/A 0.968±0.00 0.075±0.04 0.089±0.00 0.063±0.00 N/A 0.012±0.01 0.998±0.44 N/A 0.610±0.30 0.032±0.02 27.008±11.74

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