C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinol dehydrogenase 10 (all-trans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000519380 RDH10-002 ENSG00000121039 9606 + 8:73297016-73323099 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonHeartKidneyLiverLungOvaryTestisENST00000519380
Transcript ID Bladder Breast Colon Heart Kidney Liver Lung Ovary Testis
ENST00000519380 6.889±0.00 3.104±0.00 5.034±0.00 1.088±0.00 11.127±0.00 6.605±0.00 3.402±0.00 8.697±0.00 2.804±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00011X CIL_00011X_0001 CGP 8:73241329-73295789
CIL_0005C3 CIL_0005C3_0002 CGP 8:73290267-73325281
CIL_0001D6 CIL_0001D6_0001 CGP 8:73294612-73747708

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008152 IEA metabolic process
GO:0016491 IEA oxidoreductase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027053 Rdh10-001 protein_coding Mus_musculus 0 1048
ENSMUST00000152626 Rdh10-002 retained_intron Mus_musculus 0 385

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