C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005C3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000007320-ENSDARG00000012369 CGP 7955 2:29892308-29901139
GeneTranscriptPositionBiotype
ENSDARG00000007320 (rpl7)
ribosomal protein L7 		ENSDART00000019149 (rpl7-001) 29892308-29897185 protein_coding
ENSDART00000132954 (rpl7-002) 29892731-29893305 retained_intron
ENSDARG00000012369 (rdh10b)
retinol dehydrogenase 10b 		ENSDART00000004903 (rdh10b-001) 29897263-29901139 protein_coding
ENSDART00000129759 (rdh10b-201) 29897625-29900727 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0005C3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000147604-ENSG00000121039 CGP 9606 8:73290267-73325281
GeneTranscriptPositionBiotype
ENSG00000121039 (RDH10)
retinol dehydrogenase 10 (all-trans) 		ENST00000240285 (RDH10-001) 73294612-73325281 protein_coding
ENST00000518870 (RDH10-003) 73295516-73297740 retained_intron
ENST00000519380 (RDH10-002) 73297016-73323099 protein_coding
ENST00000521013 (RDH10-005) 73321840-73323308 retained_intron
ENST00000521928 (RDH10-004) 73295839-73320988 protein_coding
ENSG00000147604 (RPL7)
ribosomal protein L7 		ENST00000352983 (RPL7-001) 73290639-73293898 protein_coding
ENST00000396465 (RPL7-003) 73291042-73294438 protein_coding
ENST00000396466 (RPL7-004) 73291040-73295789 protein_coding
ENST00000396467 (RPL7-002) 73290284-73293633 protein_coding
ENST00000431653 (RPL7-005) 73291816-73293342 protein_coding
ENST00000435330 (RPL7-006) 73291783-73292922 protein_coding
ENST00000466821 (RPL7-007) 73291114-73291903 retained_intron
ENST00000487500 (RPL7-008) 73290267-73291137 processed_transcript
ENSG00000250295 (RP11-434I12.2)
 ENST00000514599 (RP11-434I12.2-001) 73310906-73356461 antisense
ENST00000517475 (RP11-434I12.2-003) 73315416-73356360 antisense
ENST00000520894 (RP11-434I12.2-002) 73297711-73315609 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0005C3_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000043716-ENSMUSG00000025921 CGP 10090 1:16101295-16133734
GeneTranscriptPositionBiotype
ENSMUSG00000025921 (Rdh10)
retinol dehydrogenase 10 (all-trans) 		ENSMUST00000027053 (Rdh10-001) 16105774-16133734 protein_coding
ENSMUST00000152626 (Rdh10-002) 16130502-16132547 retained_intron
ENSMUSG00000043716 (Rpl7)
ribosomal protein L7 		ENSMUST00000058437 (Rpl7-001) 16101295-16104662 protein_coding
ENSMUST00000125005 (Rpl7-004) 16102491-16104384 retained_intron
ENSMUST00000140597 (Rpl7-006) 16101295-16102082 processed_transcript
ENSMUST00000141217 (Rpl7-002) 16101306-16104402 retained_intron
ENSMUST00000149566 (Rpl7-003) 16101780-16104227 protein_coding
ENSMUST00000151017 (Rpl7-005) 16101528-16102848 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005C3_0001ENSDARG00000007320ENSDART00000019149ENSDART00000132954ENSDARG00000012369ENSDART00000004903ENSDART00000129759CIL_0005C3_0002ENSG00000121039ENST00000240285ENST00000518870ENST00000519380ENST00000521013ENST00000521928ENSG00000147604ENST00000352983ENST00000396465ENST00000396466ENST00000396467ENST00000431653ENST00000435330ENST00000466821ENST00000487500ENSG00000250295ENST00000514599ENST00000517475ENST00000520894CIL_0005C3_0003ENSMUSG00000025921ENSMUST00000027053ENSMUST00000152626ENSMUSG00000043716ENSMUST00000058437ENSMUST00000125005ENSMUST00000140597ENSMUST00000141217ENSMUST00000149566ENSMUST00000151017
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005C3_0001ENSDARG00000007320ENSDART00000019149ENSDARG00000012369ENSDART00000004903ENSDART00000129759CIL_0005C3_0002ENSG00000121039ENST00000240285ENST00000518870ENST00000519380ENSG00000147604ENST00000352983ENST00000396466ENST00000435330ENSG00000250295ENST00000514599CIL_0005C3_0003ENSMUSG00000025921ENSMUST00000027053ENSMUST00000152626ENSMUSG00000043716ENSMUST00000058437ENSMUST00000125005ENSMUST00000140597ENSMUST00000149566
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000007320 ENSDART00000019149 N/A N/A N/A 187.979±135.93 N/A N/A 1171.520±159.63 748.000±726.01 730.184±0.00 N/A 662.815±0.00 N/A N/A N/A
ENSDART00000132954 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000012369 ENSDART00000004903 N/A N/A N/A 4.157±1.97 N/A N/A 6.649±2.15 39.269±14.08 4.928±0.00 N/A 3.109±0.00 N/A N/A N/A
ENSDART00000129759 N/A N/A N/A N/A N/A N/A 4.645±0.00 N/A 2.551±0.00 N/A 1.407±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000121039 ENST00000240285 10.348±0.00 2.819±0.00 4.918±0.00 1.567±0.63 5.472±3.82 3.986±0.95 1.372±0.84 10.367±6.39 4.760±1.33 5.532±2.48 0.358±0.08 5.866±3.85 7.386±4.58 3.083±0.08
ENST00000518870 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.574±0.00 N/A N/A N/A
ENST00000519380 N/A N/A 6.889±0.00 N/A 3.104±0.00 5.034±0.00 1.088±0.00 11.127±0.00 6.605±0.00 3.402±0.00 N/A 8.697±0.00 N/A 2.804±0.00
ENST00000521013 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521928 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000147604 ENST00000352983 221.373±0.00 75.937±0.00 59.695±0.00 67.760±22.77 187.985±39.75 188.645±43.08 49.797±15.62 87.963±9.01 108.695±84.91 114.249±28.94 106.180±0.00 361.670±174.84 147.630±139.01 172.716±6.20
ENST00000396465 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000396466 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1148.260±0.00 177.908±3.24 N/A
ENST00000396467 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000431653 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000435330 N/A N/A N/A 37.217±0.00 70.838±0.00 93.401±0.00 31.491±0.00 86.050±0.00 106.480±0.00 46.047±0.00 N/A 340.800±0.00 N/A N/A
ENST00000466821 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487500 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000250295 ENST00000514599 N/A N/A N/A N/A 0.629±0.00 0.612±0.00 0.158±0.00 N/A N/A N/A N/A N/A N/A 0.545±0.00
ENST00000517475 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520894 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025921 ENSMUST00000027053 10.605±7.23 4.490±1.88 7.186±1.34 4.160±2.26 6.825±1.30 8.269±1.33 1.583±0.18 12.201±1.02 6.419±3.83 9.400±0.75 0.806±0.14 17.397±7.96 6.860±5.41 4.998±2.31
ENSMUST00000152626 N/A N/A N/A N/A N/A N/A N/A N/A 0.628±0.00 N/A 0.186±0.08 1.046±0.19 N/A N/A
ENSMUSG00000043716 ENSMUST00000058437 103.218±50.10 7.914±0.95 443.342±22.61 125.589±70.65 48.451±12.84 52.905±15.43 12.554±0.00 42.668±12.68 283.569±216.79 76.090±0.00 85.849±17.78 69.003±13.51 249.326±187.13 15.372±8.95
ENSMUST00000125005 N/A 31.038±6.97 N/A N/A 34.061±0.72 38.693±9.47 N/A N/A 25.648±0.00 N/A N/A 108.386±27.59 N/A N/A
ENSMUST00000140597 N/A N/A N/A 50.430±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141217 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149566 93.496±64.54 15.628±1.56 282.205±31.73 137.887±46.22 147.791±71.47 90.734±7.15 56.224±7.32 105.660±21.01 173.642±142.33 99.590±17.11 41.558±7.67 229.311±144.04 261.609±169.07 40.324±5.86
ENSMUST00000151017 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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