C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 35, member B1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000240333 SLC35B1-001 ENSG00000121073 9606 - 17:49700943-49708199 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000240333
Transcript ID Bladder Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000240333 0.779±0.00 2.649±0.00 0.802±0.00 2.667±0.60 1.203±0.00 5.226±4.68 1.245±0.78 1.491±0.00 5.772±0.54 4.610±1.04 2.813±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000877 CIL_000877_0001 VISTA 17:49438854-50041456
CIL_0009BV CIL_0009BV_0001 VISTA 17:49438877-50041441
CIL_0007QJ CIL_0007QJ_0001 VISTA 17:49459872-50061823
CIL_0004N2 CIL_0004N2_0002 CGP 17:49598884-49709014
CIL_0004N1 CIL_0004N1_0002 CGP 17:49700943-49789180

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005459 TAS UDP-galactose transmembrane transporter activity
GO:0005783 IEA endoplasmic reticulum
GO:0006810 TAS transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0043231 TAS intracellular membrane-bounded organelle
GO:0055085 IEA transmembrane transport
GO:0072334 TAS UDP-galactose transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021243 Slc35b1-001 protein_coding Mus_musculus 0 1426
ENSMUST00000131193 Slc35b1-002 nonsense_mediated_decay Mus_musculus 0 1223
ENSMUST00000143090 Slc35b1-005 retained_intron Mus_musculus 0 305

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