C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: T-box 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000121075 TBX4 9606 + 17:61452404-61485110 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000240335 TBX4-002 61456446-61484303 protein_coding
  ENST00000393853 TBX4-001 61452418-61485110 protein_coding
  ENST00000586874 TBX4-007 61478363-61481346 processed_transcript
  ENST00000589003 TBX4-003 61452404-61478740 protein_coding
  ENST00000589449 TBX4-006 61478351-61483370 processed_transcript
  ENST00000590174 TBX4-008 61465793-61480275 retained_intron
  ENST00000593249 TBX4-005 61464214-61478789 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000240335ENST00000393853ENST00000586874ENST00000589003ENST00000589449ENST00000590174ENST00000593249
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000240335 0.054±0.00 0.032±0.00 0.027±0.00 0.083±0.00 0.008±0.00 N/A 0.008±0.00 N/A 11.851±0.00 N/A 0.038±0.01 3.387±1.44 0.634±0.15
ENST00000393853 0.026±0.00 N/A N/A N/A N/A 0.005±0.00 N/A N/A 12.047±0.00 0.004±0.00 0.023±0.00 3.366±0.61 0.062±0.00
ENST00000586874 0.147±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589003 N/A N/A N/A 0.262±0.00 N/A 0.031±0.00 N/A 1.682±0.00 N/A N/A N/A N/A N/A
ENST00000589449 N/A 0.058±0.00 N/A N/A 0.114±0.00 N/A 0.020±0.00 0.034±0.00 N/A N/A N/A N/A N/A
ENST00000590174 0.105±0.00 N/A N/A N/A N/A N/A N/A N/A 4.051±0.00 N/A N/A N/A N/A
ENST00000593249 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.066±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RJ CIL_0007RJ_0001 VISTA 17:60951116-61552834
CIL_0007JV CIL_0007JV_0001 UCNEbase 17:61126460-61946035

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0002009 IEA morphogenesis of an epithelium
GO:0003677 IEA:NAS DNA binding
GO:0003700 IEA:TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA:NAS regulation of transcription, DNA-templated
GO:0007275 NAS multicellular organismal development
GO:0030324 IEA lung development
GO:0030326 IEA embryonic limb morphogenesis
GO:0035108 IMP limb morphogenesis
GO:0048705 IMP skeletal system morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030058 tbx4 T-box 4 protein_coding Danio_rerio
ENSMUSG00000000094 Tbx4 T-box 4 protein_coding Mus_musculus

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