C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: T-box 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000393853 TBX4-001 ENSG00000121075 9606 + 17:61452418-61485110 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeHeartLungMuscleOvaryPlacentaTestisENST00000393853
Transcript ID Adipose Heart Lung Muscle Ovary Placenta Testis
ENST00000393853 0.026±0.00 0.005±0.00 12.047±0.00 0.004±0.00 0.023±0.00 3.366±0.61 0.062±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RJ CIL_0007RJ_0001 VISTA 17:60951116-61552834
CIL_0007JV CIL_0007JV_0001 UCNEbase 17:61126460-61946035

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA:NAS DNA binding
GO:0003700 IEA:TAS sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA:NAS regulation of transcription, DNA-templated
GO:0007275 NAS multicellular organismal development
GO:0035108 IMP limb morphogenesis
GO:0048705 IMP skeletal system morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108047 Tbx4-001 protein_coding Mus_musculus 0 2176
ENSMUST00000000096 Tbx4-201 protein_coding Mus_musculus 0 2111
ENSMUST00000108045 Tbx4-002 protein_coding Mus_musculus 0 1790

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