C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: T-box 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000240335 TBX4-002 ENSG00000121075 9606 + 17:61456446-61484303 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLungOvaryPlacentaTestisENST00000240335
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Lung Ovary Placenta Testis
ENST00000240335 0.054±0.00 0.032±0.00 0.027±0.00 0.083±0.00 0.008±0.00 0.008±0.00 11.851±0.00 0.038±0.01 3.387±1.44 0.634±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RJ CIL_0007RJ_0001 VISTA 17:60951116-61552834
CIL_0007JV CIL_0007JV_0001 UCNEbase 17:61126460-61946035

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0002009 IEA morphogenesis of an epithelium
GO:0003677 IEA:NAS DNA binding
GO:0003700 IEA:TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA:NAS regulation of transcription, DNA-templated
GO:0007275 NAS multicellular organismal development
GO:0030324 IEA lung development
GO:0030326 IEA embryonic limb morphogenesis
GO:0035108 IMP limb morphogenesis
GO:0048705 IMP skeletal system morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108047 Tbx4-001 protein_coding Mus_musculus 0 2122
ENSMUST00000000096 Tbx4-201 protein_coding Mus_musculus 0 2115
ENSMUST00000108045 Tbx4-002 protein_coding Mus_musculus 0 1792

Loading