C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: T-box 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000000094 Tbx4 10090 + 11:85886422-85916097 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000000096 Tbx4-201 85890063-85916097 protein_coding
  ENSMUST00000108045 Tbx4-002 85896765-85916095 protein_coding
  ENSMUST00000108047 Tbx4-001 85886422-85916095 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000000096ENSMUST00000108045ENSMUST00000108047
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000000096 0.017±0.00 N/A 5.640±1.09 N/A 0.303±0.00 N/A 0.090±0.08 0.008±0.00 0.054±0.00 9.154±0.00 0.395±0.00 N/A 0.802±0.39 0.035±0.03
ENSMUST00000108045 0.152±0.12 0.090±0.05 1.247±0.00 0.036±0.00 0.150±0.10 0.440±0.14 0.002±0.00 0.033±0.02 0.023±0.01 N/A 0.558±0.38 1.084±0.30 0.456±0.00 0.226±0.11
ENSMUST00000108047 N/A N/A 2.920±0.57 0.040±0.00 N/A N/A 0.152±0.00 N/A 0.018±0.00 33.977±3.66 0.524±0.00 N/A 1.381±0.77 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RJ CIL_0007RJ_0002 VISTA 11:85412703-86014068
CIL_0007JV CIL_0007JV_0002 UCNEbase 11:85613059-86270571
CIL_00096P CIL_00096P_0002 VISTA 11:85867092-86468104
CIL_0000LR CIL_0000LR_0002 CGP 11:85886422-86201193

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001525 IMP angiogenesis
GO:0002009 IMP morphogenesis of an epithelium
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0030324 IMP lung development
GO:0030326 IMP embryonic limb morphogenesis
GO:0035108 IDA:ISS limb morphogenesis
GO:0048705 ISS skeletal system morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030058 tbx4 T-box 4 protein_coding Danio_rerio
ENSG00000121075 TBX4 T-box 4 protein_coding Homo_sapiens

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