C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger, RAN-binding domain containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000121988 ZRANB3 9606 - 2:135136916-135531236 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000264159 ZRANB3-001 135199653-135531236 protein_coding
  ENST00000401392 ZRANB3-002 135196969-135530731 protein_coding
  ENST00000403017 ZRANB3-003 135199663-135530612 nonsense_mediated_decay
  ENST00000412849 ZRANB3-009 135136916-135238861 processed_transcript
  ENST00000452187 ZRANB3-004 135269067-135531199 processed_transcript
  ENST00000472452 ZRANB3-006 135345136-135353628 processed_transcript
  ENST00000474919 ZRANB3-008 135202438-135207518 retained_intron
  ENST00000492193 ZRANB3-005 135353321-135530576 retained_intron
  ENST00000495945 ZRANB3-007 135224450-135228312 retained_intron
  ENST00000536680 ZRANB3-201 135196974-135530730 protein_coding
  ENST00000619650 ZRANB3-202 135136917-135230948 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENST00000264159
Transcript ID Testis
ENST00000264159 2.816±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006VQ CIL_0006VQ_0001 CGP 2:134964491-135176394
CIL_0006VP CIL_0006VP_0001 CGP 2:135052265-135531236
CIL_0003S4 CIL_0003S4_0002 CGP 2:135136916-135725270

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000733 IDA DNA strand renaturation
GO:0000737 IDA DNA catabolic process, endonucleolytic
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0004519 IEA endonuclease activity
GO:0004520 IDA endodeoxyribonuclease activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0006281 IDA DNA repair
GO:0006974 IDA cellular response to DNA damage stimulus
GO:0008270 IEA zinc ion binding
GO:0009411 IDA response to UV
GO:0016787 IEA hydrolase activity
GO:0031297 IDA replication fork processing
GO:0036292 IDA DNA rewinding
GO:0036310 IDA annealing helicase activity
GO:0043596 IDA nuclear replication fork
GO:0045910 IDA negative regulation of DNA recombination
GO:0048478 IDA replication fork protection
GO:0070530 IDA K63-linked polyubiquitin binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000088281 zranb3 zinc finger, RAN-binding domain containing 3 protein_coding Danio_rerio
ENSDARG00000091538 CABZ01044943.1 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000036086 Zranb3 zinc finger, RAN-binding domain containing 3 protein_coding Mus_musculus

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