C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006VP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000115839-ENSG00000121988 CGP 9606 2:135052265-135531236
GeneTranscriptPositionBiotype
ENSG00000115839 (RAB3GAP1)
RAB3 GTPase activating protein subunit 1 (catalytic) 		ENST00000264158 (RAB3GAP1-001) 135052265-135170706 protein_coding
ENST00000425393 (RAB3GAP1-003) 135052299-135059066 protein_coding
ENST00000442034 (RAB3GAP1-002) 135052298-135169989 protein_coding
ENST00000487003 (RAB3GAP1-004) 135089654-135176394 processed_transcript
ENST00000489858 (RAB3GAP1-006) 135124080-135130705 retained_intron
ENST00000497080 (RAB3GAP1-007) 135168548-135169977 retained_intron
ENST00000539493 (RAB3GAP1-201) 135089855-135175590 protein_coding
ENSG00000121988 (ZRANB3)
zinc finger, RAN-binding domain containing 3 		ENST00000264159 (ZRANB3-001) 135199653-135531236 protein_coding
ENST00000401392 (ZRANB3-002) 135196969-135530731 protein_coding
ENST00000403017 (ZRANB3-003) 135199663-135530612 nonsense_mediated_decay
ENST00000412849 (ZRANB3-009) 135136916-135238861 processed_transcript
ENST00000452187 (ZRANB3-004) 135269067-135531199 processed_transcript
ENST00000472452 (ZRANB3-006) 135345136-135353628 processed_transcript
ENST00000474919 (ZRANB3-008) 135202438-135207518 retained_intron
ENST00000492193 (ZRANB3-005) 135353321-135530576 retained_intron
ENST00000495945 (ZRANB3-007) 135224450-135228312 retained_intron
ENST00000536680 (ZRANB3-201) 135196974-135530730 protein_coding
ENST00000619650 (ZRANB3-202) 135136917-135230948 protein_coding
ENSG00000208308 (SNORA40)
Small nucleolar RNA SNORA40 		ENST00000385573 (SNORA40.1-201) 135136628-135136755 snoRNA
ENSG00000235651 (AC064850.4)
 ENST00000413279 (AC064850.4-001) 135510546-135511943 processed_pseudogene
CIL_0006VP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000036104-ENSMUSG00000036086 CGP 10090 1:127868773-128103047
GeneTranscriptPositionBiotype
ENSMUSG00000036086 (Zranb3)
zinc finger, RAN-binding domain containing 3 		ENSMUST00000086614 (Zranb3-001) 127954184-128102462 protein_coding
ENSMUST00000097597 (Zranb3-002) 127987110-128103047 protein_coding
ENSMUST00000112538 (Zranb3-005) 127954670-128103001 protein_coding
ENSMUST00000124876 (Zranb3-003) 128057856-128102454 retained_intron
ENSMUST00000127393 (Zranb3-004) 127996466-128102463 retained_intron
ENSMUST00000131732 (Zranb3-006) 127996853-128018693 processed_transcript
ENSMUST00000143389 (Zranb3-007) 127965131-127972958 processed_transcript
ENSMUSG00000036104 (Rab3gap1)
RAB3 GTPase activating protein subunit 1 		ENSMUST00000037649 (Rab3gap1-001) 127868773-127943868 protein_coding
ENSMUST00000131884 (Rab3gap1-004) 127938205-127942911 processed_transcript
ENSMUST00000142662 (Rab3gap1-003) 127868802-127904033 retained_intron
ENSMUST00000150945 (Rab3gap1-002) 127900913-127905934 retained_intron
ENSMUST00000186865 (Rab3gap1-006) 127868789-127882448 processed_transcript
ENSMUST00000189259 (Rab3gap1-005) 127923073-127926267 retained_intron
ENSMUSG00000058603 (Rpl28-ps1)
ribosomal protein L28, pseudogene 1 		ENSMUST00000121497 (Rpl28-ps1-001) 128038569-128038982 processed_pseudogene
ENSMUSG00000099760 (RP24-338G10.2)
predicted gene 28800 		ENSMUST00000186230 (RP24-338G10.2-001) 127959516-127967452 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006VP_0001ENSG00000115839ENST00000264158ENST00000425393ENST00000442034ENST00000487003ENST00000489858ENST00000497080ENST00000539493ENSG00000121988ENST00000264159ENST00000401392ENST00000403017ENST00000412849ENST00000452187ENST00000472452ENST00000474919ENST00000492193ENST00000495945ENST00000536680ENST00000619650ENSG00000208308ENST00000385573ENSG00000235651ENST00000413279CIL_0006VP_0002ENSMUSG00000036086ENSMUST00000086614ENSMUST00000097597ENSMUST00000112538ENSMUST00000124876ENSMUST00000127393ENSMUST00000131732ENSMUST00000143389ENSMUSG00000036104ENSMUST00000037649ENSMUST00000131884ENSMUST00000142662ENSMUST00000150945ENSMUST00000186865ENSMUST00000189259ENSMUSG00000058603ENSMUST00000121497ENSMUSG00000099760ENSMUST00000186230
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006VP_0001ENSG00000115839ENST00000264158ENST00000442034ENST00000539493ENSG00000121988ENST00000264159ENSG00000208308ENST00000385573ENSG00000235651ENST00000413279CIL_0006VP_0002ENSMUSG00000036086ENSMUST00000086614ENSMUST00000097597ENSMUST00000112538ENSMUST00000131732ENSMUSG00000036104ENSMUST00000037649ENSMUST00000131884ENSMUST00000186865ENSMUSG00000058603ENSMUST00000121497ENSMUSG00000099760ENSMUST00000186230
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000115839 ENST00000264158 2.312±0.00 N/A 1.848±0.00 3.501±0.00 2.918±0.67 4.941±0.00 3.051±0.00 0.774±0.00 2.397±0.81 3.930±1.79 4.290±0.00 5.287±2.19 6.199±0.94 3.305±0.00
ENST00000425393 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000442034 7.551±0.00 5.685±0.00 1.454±0.00 10.874±0.36 4.777±2.73 5.856±0.93 4.597±2.42 4.410±3.55 3.521±1.19 5.740±0.28 4.062±0.70 4.775±0.02 4.021±0.00 6.572±1.78
ENST00000487003 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489858 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539493 N/A N/A 3.451±0.00 6.181±0.00 N/A N/A N/A 2.344±0.00 N/A N/A 2.844±0.00 N/A N/A N/A
ENSG00000121988 ENST00000264159 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.816±0.00
ENST00000401392 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000403017 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000412849 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000452187 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472452 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474919 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492193 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495945 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000536680 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619650 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000208308 ENST00000385573 N/A N/A 2374.410±0.00 984.765±984.66 7530.870±0.00 7679.910±0.00 5458.920±0.00 4960.090±0.00 9809.610±0.00 6176.800±0.00 2356.170±0.00 4904.697±4903.95 N/A N/A
ENSG00000235651 ENST00000413279 N/A 0.058±0.00 0.213±0.00 0.103±0.00 0.024±0.00 0.137±0.00 0.030±0.01 0.092±0.08 0.285±0.00 0.434±0.00 0.198±0.17 0.169±0.14 0.044±0.00 0.171±0.11
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000036086 ENSMUST00000086614 0.517±0.21 0.368±0.15 0.746±0.26 1.177±0.08 0.299±0.13 N/A 0.310±0.14 0.325±0.16 1.611±1.24 0.237±0.10 0.829±0.37 1.943±0.62 1.489±0.71 0.941±0.19
ENSMUST00000097597 0.152±0.00 0.346±0.02 N/A N/A N/A 0.487±0.00 N/A N/A 0.185±0.00 0.233±0.00 N/A N/A 0.997±0.31 4.319±1.09
ENSMUST00000112538 N/A N/A N/A 0.467±0.00 N/A 0.319±0.00 0.067±0.00 N/A N/A 0.056±0.00 0.272±0.04 1.088±0.00 N/A 0.440±0.16
ENSMUST00000124876 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127393 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131732 N/A N/A N/A N/A N/A 0.962±0.32 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143389 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000036104 ENSMUST00000037649 8.162±1.63 7.673±0.65 8.496±0.34 10.956±5.67 7.561±1.62 8.170±1.91 4.822±0.75 8.421±1.11 4.679±0.76 9.141±0.53 7.328±0.40 7.595±3.53 9.081±1.36 4.153±0.36
ENSMUST00000131884 N/A 9.607±0.69 N/A 71.619±0.00 N/A N/A N/A N/A N/A N/A N/A 17.562±11.07 N/A 8.850±0.00
ENSMUST00000142662 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150945 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186865 10.191±0.17 3.855±0.23 26.105±3.58 40.702±2.22 11.899±3.27 20.541±4.64 7.869±1.28 10.358±0.87 12.557±3.79 11.611±0.80 7.428±0.86 11.293±4.49 68.030±35.90 13.024±1.04
ENSMUST00000189259 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000058603 ENSMUST00000121497 27.250±1.87 5.713±1.26 43.006±1.69 13.432±1.53 10.417±5.04 11.532±2.40 6.851±0.80 13.065±2.58 11.939±9.43 7.557±0.81 2.782±1.34 29.552±19.75 8.950±3.02 7.153±0.57
ENSMUSG00000099760 ENSMUST00000186230 0.421±0.30 0.291±0.07 N/A 0.538±0.00 0.257±0.09 0.241±0.13 N/A 0.166±0.03 0.078±0.00 0.230±0.05 N/A 1.222±0.47 0.238±0.00 N/A

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