C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003S4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000088281-ENSDARG00000063141 CGP 7955 22:12387933-12520643
GeneTranscriptPositionBiotype
ENSDARG00000063141 (r3hdm1)
R3H domain containing 1 		ENSDART00000091982 (r3hdm1-201) 12469195-12519706 protein_coding
ENSDART00000141785 (r3hdm1-002) 12514081-12519598 retained_intron
ENSDART00000146322 (r3hdm1-001) 12495876-12520643 protein_coding
ENSDARG00000088281 (zranb3)
zinc finger, RAN-binding domain containing 3 		ENSDART00000123231 (zranb3-201) 12387933-12414328 protein_coding
ENSDART00000136408 (zranb3-001) 12390194-12414329 protein_coding
CIL_0003S4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000121988-ENSG00000048991 CGP 9606 2:135136916-135725270
GeneTranscriptPositionBiotype
ENSG00000048991 (R3HDM1)
R3H domain containing 1 		ENST00000264160 (R3HDM1-001) 135531513-135725270 protein_coding
ENST00000409478 (R3HDM1-004) 135531501-135725266 protein_coding
ENST00000409606 (R3HDM1-006) 135586437-135724343 protein_coding
ENST00000410054 (R3HDM1-005) 135586250-135725268 protein_coding
ENST00000425804 (R3HDM1-015) 135638899-135651940 protein_coding
ENST00000429703 (R3HDM1-007) 135638733-135725265 protein_coding
ENST00000436436 (R3HDM1-011) 135586352-135631743 protein_coding
ENST00000438014 (R3HDM1-010) 135531517-135604820 protein_coding
ENST00000441871 (R3HDM1-014) 135638641-135651774 protein_coding
ENST00000443537 (R3HDM1-013) 135638618-135649331 processed_transcript
ENST00000445855 (R3HDM1-020) 135675398-135722537 protein_coding
ENST00000456040 (R3HDM1-012) 135604856-135636183 protein_coding
ENST00000463230 (R3HDM1-003) 135531473-135606676 retained_intron
ENST00000480793 (R3HDM1-019) 135621512-135631938 processed_transcript
ENST00000483021 (R3HDM1-008) 135531455-135602670 processed_transcript
ENST00000483065 (R3HDM1-017) 135721509-135722547 retained_intron
ENST00000486532 (R3HDM1-018) 135633712-135639114 processed_transcript
ENST00000487294 (R3HDM1-016) 135645233-135652021 retained_intron
ENST00000488035 (R3HDM1-009) 135531527-135632001 processed_transcript
ENSG00000115839 (RAB3GAP1)
RAB3 GTPase activating protein subunit 1 (catalytic) 		ENST00000264158 (RAB3GAP1-001) 135052265-135170706 protein_coding
ENST00000425393 (RAB3GAP1-003) 135052299-135059066 protein_coding
ENST00000442034 (RAB3GAP1-002) 135052298-135169989 protein_coding
ENST00000487003 (RAB3GAP1-004) 135089654-135176394 processed_transcript
ENST00000489858 (RAB3GAP1-006) 135124080-135130705 retained_intron
ENST00000497080 (RAB3GAP1-007) 135168548-135169977 retained_intron
ENST00000539493 (RAB3GAP1-201) 135089855-135175590 protein_coding
ENSG00000121988 (ZRANB3)
zinc finger, RAN-binding domain containing 3 		ENST00000264159 (ZRANB3-001) 135199653-135531236 protein_coding
ENST00000401392 (ZRANB3-002) 135196969-135530731 protein_coding
ENST00000403017 (ZRANB3-003) 135199663-135530612 nonsense_mediated_decay
ENST00000412849 (ZRANB3-009) 135136916-135238861 processed_transcript
ENST00000452187 (ZRANB3-004) 135269067-135531199 processed_transcript
ENST00000472452 (ZRANB3-006) 135345136-135353628 processed_transcript
ENST00000474919 (ZRANB3-008) 135202438-135207518 retained_intron
ENST00000492193 (ZRANB3-005) 135353321-135530576 retained_intron
ENST00000495945 (ZRANB3-007) 135224450-135228312 retained_intron
ENST00000536680 (ZRANB3-201) 135196974-135530730 protein_coding
ENST00000619650 (ZRANB3-202) 135136917-135230948 protein_coding
ENSG00000235651 (AC064850.4)
 ENST00000413279 (AC064850.4-001) 135510546-135511943 processed_pseudogene
CIL_0003S4_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000036086-ENSMUSG00000056211 CGP 10090 1:127954184-128237736
GeneTranscriptPositionBiotype
ENSMUSG00000036086 (Zranb3)
zinc finger, RAN-binding domain containing 3 		ENSMUST00000086614 (Zranb3-001) 127954184-128102462 protein_coding
ENSMUST00000097597 (Zranb3-002) 127987110-128103047 protein_coding
ENSMUST00000112538 (Zranb3-005) 127954670-128103001 protein_coding
ENSMUST00000124876 (Zranb3-003) 128057856-128102454 retained_intron
ENSMUST00000127393 (Zranb3-004) 127996466-128102463 retained_intron
ENSMUST00000131732 (Zranb3-006) 127996853-128018693 processed_transcript
ENSMUST00000143389 (Zranb3-007) 127965131-127972958 processed_transcript
ENSMUSG00000056211 (R3hdm1)
R3H domain containing 1 		ENSMUST00000036288 (R3hdm1-001) 128103324-128237736 protein_coding
ENSMUST00000185389 (R3hdm1-010) 128103331-128111788 retained_intron
ENSMUST00000185471 (R3hdm1-005) 128176837-128188656 retained_intron
ENSMUST00000185853 (R3hdm1-015) 128179143-128193500 protein_coding
ENSMUST00000187023 (R3hdm1-011) 128141964-128186909 protein_coding
ENSMUST00000187557 (R3hdm1-012) 128141987-128153326 protein_coding
ENSMUST00000187605 (R3hdm1-009) 128171631-128178143 retained_intron
ENSMUST00000187900 (R3hdm1-004) 128103324-128188856 protein_coding
ENSMUST00000188381 (R3hdm1-003) 128103321-128179129 protein_coding
ENSMUST00000188570 (R3hdm1-007) 128235379-128237736 retained_intron
ENSMUST00000189317 (R3hdm1-013) 128151814-128179182 protein_coding
ENSMUST00000189982 (R3hdm1-008) 128192832-128196540 retained_intron
ENSMUST00000190056 (R3hdm1-016) 128181741-128211239 protein_coding
ENSMUST00000190288 (R3hdm1-006) 128206992-128237735 retained_intron
ENSMUST00000191016 (R3hdm1-002) 128103301-128183131 retained_intron
ENSMUST00000191274 (R3hdm1-014) 128174693-128179117 retained_intron
ENSMUSG00000058603 (Rpl28-ps1)
ribosomal protein L28, pseudogene 1 		ENSMUST00000121497 (Rpl28-ps1-001) 128038569-128038982 processed_pseudogene
ENSMUSG00000065520 (Mir128-1)
microRNA 128-1 		ENSMUST00000083586 (Mir128-1-201) 128202355-128202436 miRNA
ENSMUSG00000099760 (RP24-338G10.2)
predicted gene 28800 		ENSMUST00000186230 (RP24-338G10.2-001) 127959516-127967452 antisense
ENSMUSG00000101535 (RP23-264E23.3)
predicted gene 29383 		ENSMUST00000188284 (RP23-264E23.3-001) 128128410-128128889 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003S4_0001ENSDARG00000063141ENSDART00000091982ENSDART00000141785ENSDART00000146322ENSDARG00000088281ENSDART00000123231ENSDART00000136408CIL_0003S4_0002ENSG00000048991ENST00000264160ENST00000409478ENST00000409606ENST00000410054ENST00000425804ENST00000429703ENST00000436436ENST00000438014ENST00000441871ENST00000443537ENST00000445855ENST00000456040ENST00000463230ENST00000480793ENST00000483021ENST00000483065ENST00000486532ENST00000487294ENST00000488035ENSG00000115839ENST00000264158ENST00000425393ENST00000442034ENST00000487003ENST00000489858ENST00000497080ENST00000539493ENSG00000121988ENST00000264159ENST00000401392ENST00000403017ENST00000412849ENST00000452187ENST00000472452ENST00000474919ENST00000492193ENST00000495945ENST00000536680ENST00000619650ENSG00000235651ENST00000413279CIL_0003S4_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003S4_0001ENSDARG00000063141ENSDART00000091982ENSDART00000146322ENSDARG00000088281ENSDART00000123231ENSDART00000136408CIL_0003S4_0002ENSG00000048991ENST00000264160ENST00000409478ENST00000409606ENST00000410054ENST00000429703ENST00000436436ENST00000463230ENST00000486532ENSG00000115839ENST00000264158ENST00000442034ENST00000539493ENSG00000121988ENST00000264159ENSG00000235651ENST00000413279CIL_0003S4_0003ENSMUSG00000036086ENSMUST00000086614ENSMUST00000097597ENSMUST00000112538ENSMUST00000131732ENSMUSG00000056211ENSMUST00000036288ENSMUST00000188381ENSMUST00000188570ENSMUST00000189317ENSMUST00000190056ENSMUST00000190288ENSMUSG00000058603ENSMUST00000121497ENSMUSG00000065520ENSMUST00000083586ENSMUSG00000099760ENSMUST00000186230ENSMUSG00000101535ENSMUST00000188284
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000063141 ENSDART00000091982 N/A N/A N/A 44.638±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000141785 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000146322 N/A N/A N/A 111.422±44.51 N/A N/A 14.332±0.00 N/A 1.902±0.00 N/A 8.165±0.00 N/A N/A N/A
ENSDARG00000088281 ENSDART00000123231 N/A N/A N/A 0.549±0.00 N/A N/A 1.173±0.00 2.630±0.00 0.026±0.00 N/A N/A N/A N/A N/A
ENSDART00000136408 N/A N/A N/A 0.813±0.00 N/A N/A 0.126±0.00 0.964±0.00 0.027±0.00 N/A 0.084±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000048991 ENST00000264160 0.795±0.00 0.806±0.00 N/A 5.929±0.00 N/A 0.841±0.00 1.239±0.00 0.715±0.00 N/A N/A 2.343±0.00 0.780±0.00 0.245±0.00 2.293±0.00
ENST00000409478 2.883±0.00 1.369±0.00 N/A N/A 1.777±0.51 1.057±0.32 0.913±0.00 2.162±0.00 0.591±0.18 0.585±0.00 N/A 2.652±1.65 1.220±0.59 3.660±0.00
ENST00000409606 N/A N/A 1.138±0.00 N/A 0.876±0.00 N/A N/A 0.298±0.00 0.639±0.00 1.066±0.00 N/A 1.071±0.00 N/A N/A
ENST00000410054 N/A N/A N/A N/A N/A 0.591±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000425804 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000429703 N/A 1.140±0.00 N/A 6.596±1.13 1.152±0.00 N/A 1.525±0.00 N/A 0.646±0.00 N/A 3.062±0.14 3.144±1.88 1.646±0.00 9.047±4.21
ENST00000436436 N/A N/A N/A 27.557±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000438014 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000441871 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000443537 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000445855 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000456040 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463230 N/A N/A N/A N/A 0.976±0.00 1.041±0.00 N/A N/A 1.248±0.00 1.215±0.00 N/A N/A N/A N/A
ENST00000480793 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483021 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483065 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486532 N/A N/A 1.358±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.483±0.00
ENST00000487294 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488035 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000115839 ENST00000264158 2.312±0.00 N/A 1.848±0.00 3.501±0.00 2.918±0.67 4.941±0.00 3.051±0.00 0.774±0.00 2.397±0.81 3.930±1.79 4.290±0.00 5.287±2.19 6.199±0.94 3.305±0.00
ENST00000425393 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000442034 7.551±0.00 5.685±0.00 1.454±0.00 10.874±0.36 4.777±2.73 5.856±0.93 4.597±2.42 4.410±3.55 3.521±1.19 5.740±0.28 4.062±0.70 4.775±0.02 4.021±0.00 6.572±1.78
ENST00000487003 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489858 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539493 N/A N/A 3.451±0.00 6.181±0.00 N/A N/A N/A 2.344±0.00 N/A N/A 2.844±0.00 N/A N/A N/A
ENSG00000121988 ENST00000264159 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.816±0.00
ENST00000401392 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000403017 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000412849 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000452187 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472452 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474919 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492193 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495945 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000536680 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619650 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000235651 ENST00000413279 N/A 0.058±0.00 0.213±0.00 0.103±0.00 0.024±0.00 0.137±0.00 0.030±0.01 0.092±0.08 0.285±0.00 0.434±0.00 0.198±0.17 0.169±0.14 0.044±0.00 0.171±0.11
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000036086 ENSMUST00000086614 0.517±0.21 0.368±0.15 0.746±0.26 1.177±0.08 0.299±0.13 N/A 0.310±0.14 0.325±0.16 1.611±1.24 0.237±0.10 0.829±0.37 1.943±0.62 1.489±0.71 0.941±0.19
ENSMUST00000097597 0.152±0.00 0.346±0.02 N/A N/A N/A 0.487±0.00 N/A N/A 0.185±0.00 0.233±0.00 N/A N/A 0.997±0.31 4.319±1.09
ENSMUST00000112538 N/A N/A N/A 0.467±0.00 N/A 0.319±0.00 0.067±0.00 N/A N/A 0.056±0.00 0.272±0.04 1.088±0.00 N/A 0.440±0.16
ENSMUST00000124876 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127393 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131732 N/A N/A N/A N/A N/A 0.962±0.32 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143389 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000056211 ENSMUST00000036288 5.599±3.01 5.765±1.63 3.413±1.58 9.635±4.33 4.759±1.61 4.100±2.52 3.722±0.68 2.457±0.94 1.204±0.42 2.605±0.91 11.739±1.34 5.269±1.10 2.232±0.35 6.734±1.14
ENSMUST00000185389 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000185471 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000185853 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187023 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187557 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187605 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187900 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188381 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.296±0.00 N/A
ENSMUST00000188570 N/A N/A 10.464±1.10 24.241±0.00 N/A N/A N/A 4.541±0.49 8.323±0.91 N/A 6.103±0.26 12.222±0.00 6.440±0.00 27.991±2.23
ENSMUST00000189317 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.247±0.09 31.030±0.00
ENSMUST00000189982 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190056 N/A 8.885±2.31 N/A N/A 6.821±1.28 6.424±0.45 N/A N/A 4.376±3.85 6.465±0.00 N/A 12.092±3.53 N/A 35.418±0.00
ENSMUST00000190288 N/A N/A N/A 3.811±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000191016 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000191274 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000058603 ENSMUST00000121497 27.250±1.87 5.713±1.26 43.006±1.69 13.432±1.53 10.417±5.04 11.532±2.40 6.851±0.80 13.065±2.58 11.939±9.43 7.557±0.81 2.782±1.34 29.552±19.75 8.950±3.02 7.153±0.57
ENSMUSG00000065520 ENSMUST00000083586 15574.000±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000099760 ENSMUST00000186230 0.421±0.30 0.291±0.07 N/A 0.538±0.00 0.257±0.09 0.241±0.13 N/A 0.166±0.03 0.078±0.00 0.230±0.05 N/A 1.222±0.47 0.238±0.00 N/A
ENSMUSG00000101535 ENSMUST00000188284 0.342±0.19 0.293±0.11 0.124±0.02 N/A 0.196±0.09 0.403±0.03 N/A 0.210±0.07 0.156±0.07 0.378±0.23 N/A 0.304±0.11 N/A 0.203±0.01

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