C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger, RAN-binding domain containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000036086 Zranb3 10090 - 1:127954184-128103047 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000086614 Zranb3-001 127954184-128102462 protein_coding
  ENSMUST00000097597 Zranb3-002 127987110-128103047 protein_coding
  ENSMUST00000112538 Zranb3-005 127954670-128103001 protein_coding
  ENSMUST00000124876 Zranb3-003 128057856-128102454 retained_intron
  ENSMUST00000127393 Zranb3-004 127996466-128102463 retained_intron
  ENSMUST00000131732 Zranb3-006 127996853-128018693 processed_transcript
  ENSMUST00000143389 Zranb3-007 127965131-127972958 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000086614ENSMUST00000097597ENSMUST00000112538ENSMUST00000131732
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000086614 0.517±0.21 0.368±0.15 0.746±0.26 1.177±0.08 0.299±0.13 N/A 0.310±0.14 0.325±0.16 1.611±1.24 0.237±0.10 0.829±0.37 1.943±0.62 1.489±0.71 0.941±0.19
ENSMUST00000097597 0.152±0.00 0.346±0.02 N/A N/A N/A 0.487±0.00 N/A N/A 0.185±0.00 0.233±0.00 N/A N/A 0.997±0.31 4.319±1.09
ENSMUST00000112538 N/A N/A N/A 0.467±0.00 N/A 0.319±0.00 0.067±0.00 N/A N/A 0.056±0.00 0.272±0.04 1.088±0.00 N/A 0.440±0.16
ENSMUST00000131732 N/A N/A N/A N/A N/A 0.962±0.32 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006VP CIL_0006VP_0002 CGP 1:127868773-128103047
CIL_0003S4 CIL_0003S4_0003 CGP 1:127954184-128237736

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000733 IEA DNA strand renaturation
GO:0000737 IEA DNA catabolic process, endonucleolytic
GO:0003677 IEA DNA binding
GO:0004520 ISS endodeoxyribonuclease activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0006281 ISS DNA repair
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0008270 IEA zinc ion binding
GO:0009411 ISS response to UV
GO:0031297 ISS replication fork processing
GO:0036292 ISS DNA rewinding
GO:0036310 ISS annealing helicase activity
GO:0043596 ISS nuclear replication fork
GO:0045910 ISS negative regulation of DNA recombination
GO:0048478 ISS replication fork protection
GO:0070530 ISS K63-linked polyubiquitin binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000088281 zranb3 zinc finger, RAN-binding domain containing 3 protein_coding Danio_rerio
ENSDARG00000091538 CABZ01044943.1 Uncharacterized protein protein_coding Danio_rerio
ENSG00000121988 ZRANB3 zinc finger, RAN-binding domain containing 3 protein_coding Homo_sapiens

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