C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: mitochondrial transcription termination factor 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000122085 MTERF4 9606 - 2:241072169-241102332 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000241527 MTERF4-002 241087094-241102295 nonsense_mediated_decay
  ENST00000391980 MTERF4-001 241095566-241102332 protein_coding
  ENST00000401626 MTERF4-018 241094406-241102287 protein_coding
  ENST00000406593 MTERF4-017 241095869-241102299 protein_coding
  ENST00000407095 MTERF4-013 241097187-241102311 protein_coding
  ENST00000414146 MTERF4-020 241090006-241099426 protein_coding
  ENST00000424798 MTERF4-025 241096601-241099894 protein_coding
  ENST00000434791 MTERF4-019 241099399-241102192 protein_coding
  ENST00000439144 MTERF4-021 241096140-241102293 protein_coding
  ENST00000449133 MTERF4-023 241089169-241094376 protein_coding
  ENST00000455202 MTERF4-004 241087225-241102331 processed_transcript
  ENST00000460915 MTERF4-010 241096926-241102321 retained_intron
  ENST00000464344 MTERF4-009 241072169-241102332 processed_transcript
  ENST00000475860 MTERF4-012 241099168-241102314 retained_intron
  ENST00000476564 MTERF4-011 241089041-241102320 retained_intron
  ENST00000479205 MTERF4-022 241089267-241094432 processed_transcript
  ENST00000480298 MTERF4-014 241088905-241102311 processed_transcript
  ENST00000488567 MTERF4-005 241087204-241096070 processed_transcript
  ENST00000493169 MTERF4-008 241089273-241102332 processed_transcript
  ENST00000495694 MTERF4-016 241089225-241102309 protein_coding
  ENST00000496878 MTERF4-006 241075054-241095673 retained_intron
  ENST00000614476 MTERF4-201 241087099-241102295 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000241527ENST00000391980ENST00000406593ENST00000455202ENST00000464344ENST00000479205ENST00000488567ENST00000496878ENST00000614476
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000241527 N/A N/A N/A N/A N/A 1.382±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000391980 7.024±0.00 7.085±0.00 1.387±0.00 2.695±0.74 8.803±0.00 N/A 2.813±1.77 3.142±1.36 2.113±0.20 N/A 8.845±0.00 11.826±0.00 4.016±1.44 N/A
ENST00000406593 N/A 14.709±0.00 N/A 3.243±0.00 N/A N/A 2.121±0.00 4.530±0.00 N/A N/A N/A 6.310±1.69 7.184±2.17 9.386±0.00
ENST00000455202 N/A N/A N/A N/A N/A N/A N/A 2.405±0.00 1.519±0.00 N/A N/A 3.158±0.00 N/A 5.028±0.00
ENST00000464344 N/A N/A N/A N/A 1.346±0.00 0.947±0.00 N/A N/A 1.265±0.00 1.414±0.00 N/A 1.199±0.00 N/A N/A
ENST00000479205 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.611±0.00 N/A N/A N/A
ENST00000488567 N/A 2.622±0.00 N/A 2.032±0.00 2.457±1.00 1.780±0.00 N/A N/A 0.892±0.00 N/A N/A 3.164±1.60 N/A 7.315±0.00
ENST00000496878 N/A N/A N/A N/A N/A N/A N/A 2.306±0.00 N/A N/A 0.709±0.00 N/A N/A N/A
ENST00000614476 N/A N/A N/A N/A N/A N/A N/A N/A 1.074±0.00 1.129±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004UE CIL_0004UE_0002 CGP 2:240906330-241095568
CIL_0004GT CIL_0004GT_0001 CGP 2:240998838-241102332
CIL_000474 CIL_000474_0001 CGP 2:241072169-241150264

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003690 IEA double-stranded DNA binding
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005739 IDA:IEA mitochondrion
GO:0005762 IDA mitochondrial large ribosomal subunit
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006364 IEA rRNA processing
GO:0006390 IEA transcription from mitochondrial promoter
GO:0006626 IEA protein targeting to mitochondrion
GO:0007507 IEA heart development
GO:0019843 IDA rRNA binding
GO:0042255 IEA ribosome assembly
GO:0043010 IEA camera-type eye development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079124 MTERF4 mitochondrial transcription termination factor 4 protein_coding Danio_rerio
ENSMUSG00000026273 Mterfd2 mitochondrial transcription termination factor 4 protein_coding Mus_musculus

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