C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004UE_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000017425-ENSDARG00000044433 CGP 7955 6:27070206-27218853
GeneTranscriptPositionBiotype
ENSDARG00000017425 (si:ch211-95g8.1)
si:ch211-95g8.1 		ENSDART00000065238 (si:ch211-95g8.1-001) 27070206-27158732 protein_coding
ENSDARG00000044433 (sned1)
sushi, nidogen and EGF-like domains 1 		ENSDART00000065255 (sned1-001) 27160107-27218853 protein_coding
CIL_0004UE_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000226321-ENSG00000162804 CGP 9606 2:240906330-241095568
GeneTranscriptPositionBiotype
ENSG00000122085 (MTERF4)
mitochondrial transcription termination factor 4 		ENST00000241527 (MTERF4-002) 241087094-241102295 nonsense_mediated_decay
ENST00000391980 (MTERF4-001) 241095566-241102332 protein_coding
ENST00000401626 (MTERF4-018) 241094406-241102287 protein_coding
ENST00000406593 (MTERF4-017) 241095869-241102299 protein_coding
ENST00000407095 (MTERF4-013) 241097187-241102311 protein_coding
ENST00000414146 (MTERF4-020) 241090006-241099426 protein_coding
ENST00000424798 (MTERF4-025) 241096601-241099894 protein_coding
ENST00000434791 (MTERF4-019) 241099399-241102192 protein_coding
ENST00000439144 (MTERF4-021) 241096140-241102293 protein_coding
ENST00000449133 (MTERF4-023) 241089169-241094376 protein_coding
ENST00000455202 (MTERF4-004) 241087225-241102331 processed_transcript
ENST00000460915 (MTERF4-010) 241096926-241102321 retained_intron
ENST00000464344 (MTERF4-009) 241072169-241102332 processed_transcript
ENST00000475860 (MTERF4-012) 241099168-241102314 retained_intron
ENST00000476564 (MTERF4-011) 241089041-241102320 retained_intron
ENST00000479205 (MTERF4-022) 241089267-241094432 processed_transcript
ENST00000480298 (MTERF4-014) 241088905-241102311 processed_transcript
ENST00000488567 (MTERF4-005) 241087204-241096070 processed_transcript
ENST00000493169 (MTERF4-008) 241089273-241102332 processed_transcript
ENST00000495694 (MTERF4-016) 241089225-241102309 protein_coding
ENST00000496878 (MTERF4-006) 241075054-241095673 retained_intron
ENST00000614476 (MTERF4-201) 241087099-241102295 protein_coding
ENSG00000162804 (SNED1)
sushi, nidogen and EGF-like domains 1 		ENST00000310397 (SNED1-001) 240998838-241095568 protein_coding
ENST00000342631 (SNED1-201) 241063378-241087461 protein_coding
ENST00000401644 (SNED1-008) 241037220-241051819 protein_coding
ENST00000401884 (SNED1-005) 240998838-241073986 protein_coding
ENST00000405547 (SNED1-004) 240998838-241095563 protein_coding
ENST00000420591 (SNED1-013) 241040116-241041362 protein_coding
ENST00000431690 (SNED1-009) 241037336-241050041 protein_coding
ENST00000466618 (SNED1-003) 241063378-241091853 retained_intron
ENST00000469006 (SNED1-010) 241048331-241053326 processed_transcript
ENST00000483962 (SNED1-011) 241051277-241052394 retained_intron
ENST00000491761 (SNED1-006) 241071406-241075605 retained_intron
ENST00000493358 (SNED1-007) 241035534-241040381 processed_transcript
ENSG00000223991 (AC104809.2)
 ENST00000425110 (AC104809.2-001) 240981515-240986072 antisense
ENSG00000226321 (AC104809.3)
Protein LOC728763 {ECO:0000313|Ensembl:ENSP00000397968} 		ENST00000443866 (AC104809.3-006) 240906330-240993311 protein_coding
ENST00000477311 (AC104809.3-007) 240932519-240933317 retained_intron
ENST00000480779 (AC104809.3-004) 240949655-240950929 retained_intron
ENSG00000229996 (AC093585.6)
 ENST00000425183 (AC093585.6-001) 241010045-241010744 antisense
ENSG00000233392 (AC104809.4)
 ENST00000418218 (AC104809.4-002) 240954617-240967451 antisense
ENST00000438506 (AC104809.4-003) 240959096-240959800 retained_intron
ENST00000457369 (AC104809.4-001) 240955024-240959354 antisense
CIL_0004UE_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000084989-ENSMUSG00000047793 CGP 10090 1:93194049-93301065
GeneTranscriptPositionBiotype
ENSMUSG00000026273 (Mterfd2)
mitochondrial transcription termination factor 4 		ENSMUST00000027492 (Mterfd2-001) 93301205-93305915 protein_coding
ENSMUST00000112942 (Mterfd2-004) 93301917-93305864 protein_coding
ENSMUST00000112944 (Mterfd2-002) 93299211-93305863 protein_coding
ENSMUST00000136754 (Mterfd2-005) 93301428-93302902 processed_transcript
ENSMUST00000152307 (Mterfd2-003) 93303498-93305879 retained_intron
ENSMUSG00000047793 (Sned1)
sushi, nidogen and EGF-like domains 1 		ENSMUST00000062202 (Sned1-001) 93235841-93301065 protein_coding
ENSMUST00000163688 (Sned1-004) 93281237-93295787 protein_coding
ENSMUST00000165843 (Sned1-006) 93274431-93282317 processed_transcript
ENSMUST00000165883 (Sned1-007) 93295695-93296598 retained_intron
ENSMUST00000168122 (Sned1-005) 93286842-93296476 retained_intron
ENSMUST00000172289 (Sned1-002) 93235851-93284507 retained_intron
ENSMUSG00000084989 (E030010N08Rik)
RIKEN cDNA E030010N08 gene 		ENSMUST00000138595 (E030010N08Rik-001) 93215899-93231072 protein_coding
ENSMUST00000188817 (E030010N08Rik-002) 93194049-93198641 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004UE_0001ENSDARG00000017425ENSDART00000065238ENSDARG00000044433ENSDART00000065255CIL_0004UE_0002ENSG00000122085ENST00000241527ENST00000391980ENST00000401626ENST00000406593ENST00000407095ENST00000414146ENST00000424798ENST00000434791ENST00000439144ENST00000449133ENST00000455202ENST00000460915ENST00000464344ENST00000475860ENST00000476564ENST00000479205ENST00000480298ENST00000488567ENST00000493169ENST00000495694ENST00000496878ENST00000614476ENSG00000162804ENST00000310397ENST00000342631ENST00000401644ENST00000401884ENST00000405547ENST00000420591ENST00000431690ENST00000466618ENST00000469006ENST00000483962ENST00000491761ENST00000493358ENSG00000223991ENST00000425110ENSG00000226321ENST00000443866ENST00000477311ENST00000480779ENSG00000229996ENST00000425183ENSG00000233392ENST00000418218ENST00000438506ENST00000457369CIL_0004UE_0003ENSMUSG00000026273ENSMUST00000027492ENSMUST00000112942ENSMUST00000112944ENSMUST00000136754ENSMUST00000152307ENSMUSG00000047793ENSMUST00000062202ENSMUST00000163688ENSMUST00000165843ENSMUST00000165883ENSMUST00000168122ENSMUST00000172289ENSMUSG00000084989ENSMUST00000138595ENSMUST00000188817
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004UE_0001ENSDARG00000017425ENSDART00000065238ENSDARG00000044433ENSDART00000065255CIL_0004UE_0002ENSG00000122085ENST00000241527ENST00000391980ENST00000406593ENST00000455202ENST00000464344ENST00000479205ENST00000488567ENST00000496878ENST00000614476ENSG00000162804ENST00000310397ENST00000405547ENST00000466618ENSG00000223991ENST00000425110ENSG00000226321ENST00000443866ENST00000480779ENSG00000229996ENST00000425183ENSG00000233392ENST00000418218ENST00000438506ENST00000457369CIL_0004UE_0003ENSMUSG00000026273ENSMUST00000027492ENSMUST00000112942ENSMUST00000112944ENSMUSG00000047793ENSMUST00000062202ENSMUST00000163688ENSMUST00000172289ENSMUSG00000084989ENSMUST00000138595ENSMUST00000188817
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000017425 ENSDART00000065238 N/A N/A N/A 0.466±0.06 N/A N/A 0.015±0.00 0.678±0.37 0.005±0.00 N/A 0.046±0.00 N/A N/A N/A
ENSDARG00000044433 ENSDART00000065255 N/A N/A N/A 0.226±0.03 N/A N/A 0.820±0.45 0.463±0.28 0.107±0.00 N/A 0.067±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000122085 ENST00000241527 N/A N/A N/A N/A N/A 1.382±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000391980 7.024±0.00 7.085±0.00 1.387±0.00 2.695±0.74 8.803±0.00 N/A 2.813±1.77 3.142±1.36 2.113±0.20 N/A 8.845±0.00 11.826±0.00 4.016±1.44 N/A
ENST00000401626 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000406593 N/A 14.709±0.00 N/A 3.243±0.00 N/A N/A 2.121±0.00 4.530±0.00 N/A N/A N/A 6.310±1.69 7.184±2.17 9.386±0.00
ENST00000407095 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000414146 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000424798 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434791 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000439144 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449133 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000455202 N/A N/A N/A N/A N/A N/A N/A 2.405±0.00 1.519±0.00 N/A N/A 3.158±0.00 N/A 5.028±0.00
ENST00000460915 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464344 N/A N/A N/A N/A 1.346±0.00 0.947±0.00 N/A N/A 1.265±0.00 1.414±0.00 N/A 1.199±0.00 N/A N/A
ENST00000475860 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476564 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479205 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.611±0.00 N/A N/A N/A
ENST00000480298 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488567 N/A 2.622±0.00 N/A 2.032±0.00 2.457±1.00 1.780±0.00 N/A N/A 0.892±0.00 N/A N/A 3.164±1.60 N/A 7.315±0.00
ENST00000493169 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495694 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496878 N/A N/A N/A N/A N/A N/A N/A 2.306±0.00 N/A N/A 0.709±0.00 N/A N/A N/A
ENST00000614476 N/A N/A N/A N/A N/A N/A N/A N/A 1.074±0.00 1.129±0.00 N/A N/A N/A N/A
ENSG00000162804 ENST00000310397 2.866±0.00 N/A 0.540±0.00 1.004±0.55 3.586±0.00 1.267±0.70 1.697±0.00 1.140±0.00 0.706±0.00 2.696±1.40 3.499±0.00 2.949±2.14 0.450±0.00 2.905±0.00
ENST00000342631 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000401644 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000401884 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000405547 N/A N/A N/A N/A N/A 1.309±0.00 N/A 0.729±0.00 0.622±0.00 N/A N/A N/A N/A N/A
ENST00000420591 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000431690 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466618 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.932±0.00 N/A N/A
ENST00000469006 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483962 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491761 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493358 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000223991 ENST00000425110 N/A N/A N/A 0.035±0.00 N/A N/A N/A 0.623±0.00 2.901±0.00 0.274±0.00 N/A 1.021±0.00 N/A 0.187±0.04
ENSG00000226321 ENST00000443866 N/A 0.048±0.00 N/A 0.042±0.00 0.015±0.00 0.032±0.00 0.020±0.00 N/A N/A 0.508±0.00 N/A 0.119±0.00 N/A 0.085±0.03
ENST00000477311 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480779 N/A N/A N/A 0.078±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000229996 ENST00000425183 0.123±0.00 0.477±0.00 1.263±0.00 0.247±0.08 0.310±0.23 N/A N/A N/A 0.577±0.00 N/A 0.842±0.00 0.859±0.00 N/A N/A
ENSG00000233392 ENST00000418218 N/A N/A N/A 0.062±0.00 0.036±0.00 N/A N/A N/A N/A N/A N/A N/A 0.074±0.00 N/A
ENST00000438506 N/A N/A N/A N/A N/A 0.795±0.00 N/A N/A N/A N/A N/A N/A 0.144±0.00 N/A
ENST00000457369 0.062±0.00 N/A N/A 0.209±0.11 N/A N/A 0.032±0.00 N/A N/A N/A N/A 0.715±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026273 ENSMUST00000027492 N/A N/A N/A 4.436±0.58 N/A N/A N/A N/A 6.078±1.01 N/A 2.522±0.38 N/A 8.650±2.46 7.629±1.20
ENSMUST00000112942 N/A N/A N/A N/A N/A N/A N/A N/A 1.237±0.05 N/A N/A N/A 1.192±0.00 N/A
ENSMUST00000112944 14.841±12.64 15.823±3.65 12.544±0.37 5.831±2.36 14.025±5.37 6.934±1.32 2.525±0.00 4.032±1.26 1.572±1.26 13.236±0.34 N/A 21.619±5.42 1.632±0.98 3.053±0.44
ENSMUST00000136754 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152307 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000047793 ENSMUST00000062202 8.824±6.31 4.373±0.78 4.516±0.60 2.154±1.36 5.213±1.38 2.300±0.67 1.710±0.25 1.886±0.71 0.557±0.46 6.248±0.54 0.783±0.15 7.457±1.62 0.529±0.33 1.062±0.34
ENSMUST00000163688 N/A 4.934±0.00 N/A N/A N/A N/A 3.532±0.00 N/A N/A N/A N/A 10.706±0.84 N/A N/A
ENSMUST00000165843 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000165883 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000168122 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172289 N/A 2.599±0.25 N/A N/A N/A 1.564±0.16 N/A 1.286±0.00 1.200±0.00 5.061±0.43 N/A 5.697±1.46 N/A 0.848±0.00
ENSMUSG00000084989 ENSMUST00000138595 0.069±0.02 0.016±0.00 N/A 0.177±0.00 0.152±0.11 0.030±0.02 0.093±0.06 0.019±0.01 0.008±0.01 0.802±0.00 0.022±0.00 1.684±0.93 0.037±0.03 0.091±0.03
ENSMUST00000188817 0.524±0.29 N/A 0.170±0.05 0.804±0.00 0.267±0.01 N/A N/A 0.094±0.00 0.024±0.00 1.391±0.00 N/A 1.801±0.93 0.158±0.00 0.100±0.01

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