C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein L5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000122406 RPL5 9606 + 1:92832025-92841924 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000315741 RPL5-006 92832109-92837469 protein_coding
  ENST00000370321 RPL5-001 92832025-92841924 protein_coding
  ENST00000461952 RPL5-004 92832762-92836271 retained_intron
  ENST00000470843 RPL5-003 92832064-92836354 nonsense_mediated_decay
  ENST00000497519 RPL5-005 92836610-92841862 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000370321
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000370321 489.888±0.00 636.609±0.00 41.435±0.00 160.142±66.42 300.390±145.53 441.249±290.39 113.459±70.51 192.603±85.62 188.996±16.45 354.941±250.18 131.432±73.76 714.367±545.23 416.517±116.64 334.165±202.87

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007CC CIL_0007CC_0002 CGP 1:92508696-92841924
CIL_0007CB CIL_0007CB_0002 CGP 1:92832025-92961522

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006364 IMP rRNA processing
GO:0006412 IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0008097 IEA 5S rRNA binding
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0030529 IDA ribonucleoprotein complex
GO:0042273 IMP ribosomal large subunit biogenesis
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015862 rpl5b ribosomal protein L5b protein_coding Danio_rerio
ENSDARG00000020197 rpl5a ribosomal protein L5a protein_coding Danio_rerio
ENSMUSG00000058558 Rpl5 ribosomal protein L5 protein_coding Mus_musculus

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