C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000370321 RPL5-001 ENSG00000122406 9606 + 1:92832025-92841924 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000370321
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000370321 489.888±0.00 636.609±0.00 41.435±0.00 160.142±66.42 300.390±145.53 441.249±290.39 113.459±70.51 192.603±85.62 188.996±16.45 354.941±250.18 131.432±73.76 714.367±545.23 416.517±116.64 334.165±202.87

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007CC CIL_0007CC_0002 CGP 1:92508696-92841924
CIL_0007CB CIL_0007CB_0002 CGP 1:92832025-92961522

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006364 IMP rRNA processing
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0008097 IEA 5S rRNA binding
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0030529 IDA ribonucleoprotein complex
GO:0042273 IMP ribosomal large subunit biogenesis
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071641 Gm15500-002 processed_transcript Mus_musculus 0 1314
ENSMUST00000082223 Rpl5-001 protein_coding Mus_musculus 0 1314
ENSMUST00000071523 Gm15500-001 transcribed_processed_pseudogene Mus_musculus 0 1258
ENSMUST00000121367 Rpl5-ps1-001 processed_pseudogene Mus_musculus 0 1203
ENSMUST00000119057 Rpl5-ps2-001 processed_pseudogene Mus_musculus 0 1192
ENSMUST00000121088 Gm11307-001 processed_pseudogene Mus_musculus 0 887
ENSMUST00000153590 Rpl5-002 protein_coding Mus_musculus 0 887
ENSMUST00000123183 Rpl5-003 retained_intron Mus_musculus 0 773
ENSMUST00000169624 Gm19840-001 processed_pseudogene Mus_musculus 0 749
ENSMUST00000140659 Rpl5-005 retained_intron Mus_musculus 0 544
ENSMUST00000118662 Gm15616-001 processed_pseudogene Mus_musculus 0 490
ENSMUST00000118025 Gm15766-001 processed_pseudogene Mus_musculus 0 453
ENSMUST00000121897 Gm15877-001 processed_pseudogene Mus_musculus 0 440
ENSMUST00000129944 Rpl5-004 retained_intron Mus_musculus 0 305
ENSMUST00000151767 Rpl5-006 retained_intron Mus_musculus 0 291

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