C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000470843 RPL5-003 ENSG00000122406 9606 + 1:92832064-92836354 nonsense_mediated_decay

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007CC CIL_0007CC_0002 CGP 1:92508696-92841924
CIL_0007CB CIL_0007CB_0002 CGP 1:92832025-92961522

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0008097 IEA 5S rRNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071523 Gm15500-001 transcribed_processed_pseudogene Mus_musculus 0 433
ENSMUST00000071641 Gm15500-002 processed_transcript Mus_musculus 0 433
ENSMUST00000121367 Rpl5-ps1-001 processed_pseudogene Mus_musculus 0 433
ENSMUST00000153590 Rpl5-002 protein_coding Mus_musculus 0 433
ENSMUST00000123183 Rpl5-003 retained_intron Mus_musculus 0 433
ENSMUST00000082223 Rpl5-001 protein_coding Mus_musculus 0 433
ENSMUST00000119057 Rpl5-ps2-001 processed_pseudogene Mus_musculus 0 394
ENSMUST00000169624 Gm19840-001 processed_pseudogene Mus_musculus 0 344
ENSMUST00000118025 Gm15766-001 processed_pseudogene Mus_musculus 0 316
ENSMUST00000118662 Gm15616-001 processed_pseudogene Mus_musculus 0 279
ENSMUST00000129944 Rpl5-004 retained_intron Mus_musculus 0 241

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