C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein L5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000058558 Rpl5 10090 + 5:107900502-107909005 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000082223 Rpl5-001 107900502-107909005 protein_coding
  ENSMUST00000123183 Rpl5-003 107900572-107904123 retained_intron
  ENSMUST00000129944 Rpl5-004 107902121-107903885 retained_intron
  ENSMUST00000140659 Rpl5-005 107904114-107908050 retained_intron
  ENSMUST00000151767 Rpl5-006 107906622-107908055 retained_intron
  ENSMUST00000153590 Rpl5-002 107900874-107904828 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000082223ENSMUST00000123183ENSMUST00000140659ENSMUST00000153590
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000082223 22.902±16.46 5.601±2.22 122.274±59.51 69.782±0.00 37.206±6.34 33.982±7.28 23.530±0.90 36.423±5.89 54.462±35.02 35.945±0.00 20.893±10.96 71.130±54.96 120.578±52.52 N/A
ENSMUST00000123183 104.773±63.68 26.424±7.14 384.327±28.33 87.221±18.56 82.680±22.85 137.177±41.23 58.187±4.72 103.752±13.21 107.832±77.14 122.046±12.63 35.345±5.29 142.295±76.12 309.440±125.47 44.907±9.36
ENSMUST00000140659 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 53.845±0.00 N/A 6.773±0.00
ENSMUST00000153590 52.483±20.10 27.711±10.18 N/A 79.422±17.09 76.611±58.98 55.842±18.91 28.517±2.44 50.435±5.32 30.962±5.56 36.851±0.00 67.608±0.00 169.546±131.52 299.179±187.71 78.373±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007CB CIL_0007CB_0003 CGP 5:107900502-107987085

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0005925 IEA focal adhesion
GO:0006364 IEA rRNA processing
GO:0006412 IEA translation
GO:0008097 IEA 5S rRNA binding
GO:0016020 IEA membrane
GO:0022625 IEA cytosolic large ribosomal subunit
GO:0030529 ISO ribonucleoprotein complex
GO:0042273 IEA ribosomal large subunit biogenesis
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015862 rpl5b ribosomal protein L5b protein_coding Danio_rerio
ENSDARG00000020197 rpl5a ribosomal protein L5a protein_coding Danio_rerio
ENSG00000122406 RPL5 ribosomal protein L5 protein_coding Homo_sapiens

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