C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA polymerase II associated protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000122484 RPAP2 9606 + 1:92298965-92402056 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000477322 RPAP2-003 92333242-92387233 retained_intron
  ENST00000484158 RPAP2-002 92299085-92324084 processed_transcript
  ENST00000610020 RPAP2-001 92298965-92402056 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000477322ENST00000484158ENST00000610020
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000477322 N/A N/A N/A 9.003±0.00 N/A N/A 4.104±0.00 N/A N/A 5.046±2.36 2.575±0.00 N/A 1.668±0.00 N/A
ENST00000484158 1.721±0.00 N/A N/A 4.188±0.00 N/A 1.935±0.00 2.079±0.00 1.825±0.00 N/A N/A 1.975±0.00 6.015±0.00 1.421±0.00 N/A
ENST00000610020 0.367±0.00 1.602±0.00 0.243±0.00 0.954±0.07 0.951±0.17 0.463±0.00 0.663±0.28 0.415±0.16 0.685±0.35 0.499±0.06 0.470±0.07 0.842±0.22 0.612±0.36 1.638±0.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007CA CIL_0007CA_0002 CGP 1:92217940-92298987
CIL_0005ZN CIL_0005ZN_0001 CGP 1:92246402-92402056
CIL_0005ZO CIL_0005ZO_0001 CGP 1:92298965-92486876

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0008420 IMP CTD phosphatase activity
GO:0009301 IMP snRNA transcription
GO:0016591 IDA DNA-directed RNA polymerase II, holoenzyme
GO:0046872 IEA metal ion binding
GO:0070940 IMP dephosphorylation of RNA polymerase II C-terminal domain

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038397 rpap2 RNA polymerase II associated protein 2 protein_coding Danio_rerio
ENSMUSG00000033773 Rpap2 RNA polymerase II associated protein 2 protein_coding Mus_musculus

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