C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA polymerase II associated protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000033773 Rpap2 10090 + 5:107597373-107661838 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000065422 Rpap2-007 107597735-107661838 protein_coding
  ENSMUST00000112650 Rpap2-003 107597373-107642679 protein_coding
  ENSMUST00000112651 Rpap2-001 107597696-107661838 protein_coding
  ENSMUST00000112654 Rpap2-002 107597717-107642679 protein_coding
  ENSMUST00000112655 Rpap2-008 107597774-107642669 protein_coding
  ENSMUST00000129483 Rpap2-005 107597982-107606988 processed_transcript
  ENSMUST00000147284 Rpap2-006 107597721-107601969 processed_transcript
  ENSMUST00000150074 Rpap2-004 107597961-107601797 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000065422ENSMUST00000112650ENSMUST00000112651ENSMUST00000112654ENSMUST00000112655ENSMUST00000147284
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000065422 1.888±0.64 N/A 5.495±0.46 2.072±0.00 N/A 1.222±0.26 0.762±0.00 2.520±0.65 1.287±0.31 3.084±0.37 4.962±3.50 5.581±1.25 15.538±0.00
ENSMUST00000112650 1.027±0.16 0.715±0.22 N/A 0.824±0.00 1.063±0.15 N/A N/A 0.469±0.00 0.632±0.10 N/A 1.214±0.29 N/A N/A
ENSMUST00000112651 1.284±0.19 1.717±0.55 N/A 0.872±0.00 2.030±0.49 N/A 1.503±0.39 1.158±0.37 0.959±0.08 N/A 1.394±0.34 N/A 8.228±1.02
ENSMUST00000112654 N/A N/A N/A N/A 1.116±0.00 0.638±0.00 0.593±0.06 0.931±0.35 0.931±0.00 2.064±0.20 N/A N/A N/A
ENSMUST00000112655 N/A N/A N/A N/A N/A N/A N/A 0.393±0.04 N/A N/A N/A N/A N/A
ENSMUST00000147284 N/A 5.012±0.61 N/A N/A N/A N/A N/A 3.672±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007CA CIL_0007CA_0003 CGP 5:107508944-107597888
CIL_0005ZN CIL_0005ZN_0002 CGP 5:107548967-107661838
CIL_0005ZO CIL_0005ZO_0002 CGP 5:107597373-107726036

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 ISS nucleus
GO:0005730 IEA nucleolus
GO:0005737 ISS cytoplasm
GO:0008420 ISS CTD phosphatase activity
GO:0009301 ISS snRNA transcription
GO:0016591 ISS DNA-directed RNA polymerase II, holoenzyme
GO:0046872 IEA metal ion binding
GO:0070940 ISS dephosphorylation of RNA polymerase II C-terminal domain

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038397 rpap2 RNA polymerase II associated protein 2 protein_coding Danio_rerio
ENSG00000122484 RPAP2 RNA polymerase II associated protein 2 protein_coding Homo_sapiens

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