C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005ZO_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000122484-ENSG00000162676 CGP 9606 1:92298965-92486876
GeneTranscriptPositionBiotype
ENSG00000122484 (RPAP2)
RNA polymerase II associated protein 2 		ENST00000477322 (RPAP2-003) 92333242-92387233 retained_intron
ENST00000484158 (RPAP2-002) 92299085-92324084 processed_transcript
ENST00000610020 (RPAP2-001) 92298965-92402056 protein_coding
ENSG00000174842 (GLMN)
glomulin, FKBP associated protein 		ENST00000370360 (GLMN-001) 92246402-92298976 protein_coding
ENST00000463560 (GLMN-005) 92262865-92286592 protein_coding
ENST00000471465 (GLMN-006) 92246492-92248408 retained_intron
ENST00000487911 (GLMN-003) 92297521-92298987 retained_intron
ENST00000495106 (GLMN-002) 92246490-92298987 nonsense_mediated_decay
ENST00000495852 (GLMN-004) 92247062-92271652 protein_coding
ENSG00000242764 (RN7SL824P)
RNA, 7SL, cytoplasmic 824, pseudogene 		ENST00000470692 (RN7SL824P-201) 92402389-92402685 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0005ZO_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000033773-ENSMUSG00000029275 CGP 10090 5:107597373-107726036
GeneTranscriptPositionBiotype
ENSMUSG00000029275 (Gfi1)
growth factor independent 1 		ENSMUST00000031205 (Gfi1-002) 107716657-107724343 protein_coding
ENSMUST00000065478 (Gfi1-201) 107716666-107725805 protein_coding
ENSMUST00000159164 (Gfi1-001) 107716657-107725805 protein_coding
ENSMUST00000159263 (Gfi1-003) 107721606-107726036 protein_coding
ENSMUST00000165344 (Gfi1-202) 107717224-107723961 protein_coding
ENSMUSG00000029276 (Glmn)
glomulin, FKBP associated protein 		ENSMUST00000078021 (Glmn-001) 107548967-107597639 protein_coding
ENSMUST00000082121 (Glmn-002) 107549023-107597888 protein_coding
ENSMUST00000100949 (Glmn-005) 107548969-107597577 protein_coding
ENSMUST00000124140 (Glmn-003) 107575321-107597546 protein_coding
ENSMUST00000124546 (Glmn-006) 107549024-107597544 nonsense_mediated_decay
ENSMUST00000137939 (Glmn-004) 107549022-107551410 retained_intron
ENSMUST00000143113 (Glmn-007) 107575287-107597639 processed_transcript
ENSMUST00000148505 (Glmn-008) 107572280-107597566 processed_transcript
ENSMUSG00000033773 (Rpap2)
RNA polymerase II associated protein 2 		ENSMUST00000065422 (Rpap2-007) 107597735-107661838 protein_coding
ENSMUST00000112650 (Rpap2-003) 107597373-107642679 protein_coding
ENSMUST00000112651 (Rpap2-001) 107597696-107661838 protein_coding
ENSMUST00000112654 (Rpap2-002) 107597717-107642679 protein_coding
ENSMUST00000112655 (Rpap2-008) 107597774-107642669 protein_coding
ENSMUST00000129483 (Rpap2-005) 107597982-107606988 processed_transcript
ENSMUST00000147284 (Rpap2-006) 107597721-107601969 processed_transcript
ENSMUST00000150074 (Rpap2-004) 107597961-107601797 protein_coding
ENSMUSG00000085900 (A930041C12Rik)
RIKEN cDNA A930041C12 gene 		ENSMUST00000149156 (A930041C12Rik-001) 107630250-107633850 antisense
ENSMUSG00000090030 (A430072P03Rik)
RIKEN cDNA A430072P03 gene 		ENSMUST00000161480 (A430072P03Rik-001) 107725157-107727104 processed_transcript
ENSMUST00000162148 (A430072P03Rik-002) 107726398-107728801 processed_transcript
ENSMUSG00000097035 (Gm26692)
predicted gene, 26692 		ENSMUST00000180428 (Gm26692-201) 107659097-107688015 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005ZO_0001ENSG00000122484ENST00000477322ENST00000484158ENST00000610020ENSG00000174842ENST00000370360ENST00000463560ENST00000471465ENST00000487911ENST00000495106ENST00000495852ENSG00000242764ENST00000470692CIL_0005ZO_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005ZO_0001ENSG00000122484ENST00000477322ENST00000484158ENST00000610020ENSG00000174842ENST00000370360ENST00000463560ENST00000495106ENSG00000242764ENST00000470692CIL_0005ZO_0002ENSMUSG00000029275ENSMUST00000031205ENSMUST00000065478ENSMUST00000159164ENSMUST00000159263ENSMUST00000165344ENSMUSG00000029276ENSMUST00000078021ENSMUST00000082121ENSMUST00000100949ENSMUSG00000033773ENSMUST00000065422ENSMUST00000112650ENSMUST00000112651ENSMUST00000112654ENSMUST00000112655ENSMUST00000147284ENSMUSG00000085900ENSMUST00000149156ENSMUSG00000090030ENSMUST00000161480ENSMUST00000162148ENSMUSG00000097035ENSMUST00000180428
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000122484 ENST00000477322 N/A N/A N/A 9.003±0.00 N/A N/A 4.104±0.00 N/A N/A 5.046±2.36 2.575±0.00 N/A 1.668±0.00 N/A
ENST00000484158 1.721±0.00 N/A N/A 4.188±0.00 N/A 1.935±0.00 2.079±0.00 1.825±0.00 N/A N/A 1.975±0.00 6.015±0.00 1.421±0.00 N/A
ENST00000610020 0.367±0.00 1.602±0.00 0.243±0.00 0.954±0.07 0.951±0.17 0.463±0.00 0.663±0.28 0.415±0.16 0.685±0.35 0.499±0.06 0.470±0.07 0.842±0.22 0.612±0.36 1.638±0.44
ENSG00000174842 ENST00000370360 1.044±0.00 N/A N/A 1.711±0.00 N/A 1.288±0.00 N/A N/A N/A N/A N/A 2.227±0.28 1.157±0.05 3.272±0.00
ENST00000463560 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.954±0.00 14.560±0.00
ENST00000471465 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487911 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495106 N/A N/A N/A N/A N/A N/A 2.067±0.00 1.210±0.00 N/A N/A N/A 3.432±0.00 1.833±0.00 N/A
ENST00000495852 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000242764 ENST00000470692 N/A N/A N/A 0.328±0.00 N/A N/A N/A 0.303±0.00 0.273±0.00 N/A N/A N/A N/A 0.055±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029275 ENSMUST00000031205 0.060±0.03 0.134±0.00 0.064±0.00 N/A 0.538±0.46 2.737±1.68 N/A 0.076±0.02 0.403±0.22 0.317±0.13 N/A 0.370±0.18 0.108±0.04 N/A
ENSMUST00000065478 0.025±0.00 0.016±0.01 N/A 0.010±0.00 0.175±0.00 N/A 0.036±0.01 0.047±0.04 0.018±0.00 N/A 0.041±0.02 0.141±0.00 0.138±0.07 N/A
ENSMUST00000159164 0.024±0.00 0.016±0.01 N/A 0.008±0.00 0.151±0.00 N/A 0.032±0.01 0.028±0.01 0.441±0.33 N/A 0.024±0.02 N/A N/A N/A
ENSMUST00000159263 N/A 0.132±0.04 N/A 0.021±0.00 1.227±0.00 N/A N/A 0.113±0.06 2.066±0.00 0.799±0.00 N/A 2.013±0.25 N/A N/A
ENSMUST00000165344 0.133±0.08 0.030±0.00 0.067±0.01 0.055±0.00 0.203±0.10 1.509±0.00 0.039±0.02 0.085±0.02 0.340±0.25 0.162±0.13 0.051±0.00 0.408±0.00 0.353±0.11 N/A
ENSMUSG00000029276 ENSMUST00000078021 N/A N/A 3.768±0.55 6.825±0.00 N/A N/A N/A N/A 3.385±1.01 N/A 1.921±0.24 4.594±0.63 5.436±1.40 N/A
ENSMUST00000082121 N/A N/A N/A N/A 1.695±0.00 N/A 1.056±0.13 N/A N/A N/A 1.561±0.00 N/A 4.274±1.38 7.676±0.00
ENSMUST00000100949 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.713±0.00 4.243±0.00 N/A
ENSMUST00000124140 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000124546 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137939 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143113 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148505 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000033773 ENSMUST00000065422 1.888±0.64 N/A 5.495±0.46 N/A 2.072±0.00 N/A 1.222±0.26 0.762±0.00 2.520±0.65 1.287±0.31 3.084±0.37 4.962±3.50 5.581±1.25 15.538±0.00
ENSMUST00000112650 1.027±0.16 0.715±0.22 N/A N/A 0.824±0.00 1.063±0.15 N/A N/A 0.469±0.00 0.632±0.10 N/A 1.214±0.29 N/A N/A
ENSMUST00000112651 1.284±0.19 1.717±0.55 N/A N/A 0.872±0.00 2.030±0.49 N/A 1.503±0.39 1.158±0.37 0.959±0.08 N/A 1.394±0.34 N/A 8.228±1.02
ENSMUST00000112654 N/A N/A N/A N/A N/A 1.116±0.00 0.638±0.00 0.593±0.06 0.931±0.35 0.931±0.00 2.064±0.20 N/A N/A N/A
ENSMUST00000112655 N/A N/A N/A N/A N/A N/A N/A N/A 0.393±0.04 N/A N/A N/A N/A N/A
ENSMUST00000129483 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147284 N/A 5.012±0.61 N/A N/A N/A N/A N/A N/A 3.672±0.00 N/A N/A N/A N/A N/A
ENSMUST00000150074 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000085900 ENSMUST00000149156 N/A N/A 0.049±0.00 0.162±0.04 0.161±0.06 0.268±0.00 N/A 0.093±0.00 0.091±0.08 N/A 0.085±0.01 0.548±0.26 0.099±0.03 0.311±0.15
ENSMUSG00000090030 ENSMUST00000161480 N/A N/A N/A N/A N/A N/A N/A 0.027±0.00 N/A N/A 0.046±0.00 N/A 0.051±0.00 N/A
ENSMUST00000162148 N/A 0.156±0.00 N/A N/A N/A N/A N/A N/A 0.128±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000097035 ENSMUST00000180428 0.080±0.04 N/A 0.078±0.01 0.253±0.00 0.173±0.09 N/A 0.041±0.00 0.049±0.00 0.166±0.07 0.080±0.01 0.031±0.00 0.425±0.13 0.039±0.01 0.184±0.14

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