C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA polymerase II associated protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000610020 RPAP2-001 ENSG00000122484 9606 + 1:92298965-92402056 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000610020
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000610020 0.367±0.00 1.602±0.00 0.243±0.00 0.954±0.07 0.951±0.17 0.463±0.00 0.663±0.28 0.415±0.16 0.685±0.35 0.499±0.06 0.470±0.07 0.842±0.22 0.612±0.36 1.638±0.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007CA CIL_0007CA_0002 CGP 1:92217940-92298987
CIL_0005ZN CIL_0005ZN_0001 CGP 1:92246402-92402056
CIL_0005ZO CIL_0005ZO_0001 CGP 1:92298965-92486876

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0008420 IMP CTD phosphatase activity
GO:0009301 IMP snRNA transcription
GO:0016591 IDA DNA-directed RNA polymerase II, holoenzyme
GO:0046872 IEA metal ion binding
GO:0070940 IMP dephosphorylation of RNA polymerase II C-terminal domain

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000065422 Rpap2-007 protein_coding Mus_musculus 0 1120
ENSMUST00000112651 Rpap2-001 protein_coding Mus_musculus 0 1072
ENSMUST00000112650 Rpap2-003 protein_coding Mus_musculus 0 1016
ENSMUST00000112655 Rpap2-008 protein_coding Mus_musculus 0 1013
ENSMUST00000112654 Rpap2-002 protein_coding Mus_musculus 0 1013
ENSMUST00000129483 Rpap2-005 processed_transcript Mus_musculus 0 396
ENSMUST00000142867 Ubxn2a-002 protein_coding Mus_musculus 0.00009 57
ENSMUST00000020962 Ubxn2a-001 protein_coding Mus_musculus 0.00009 57

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