C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: single-strand-selective monofunctional uracil-DNA glycosylase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000123415 SMUG1 9606 - 12:54164745-54188994 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000243112 SMUG1-008 54181471-54188976 protein_coding
  ENST00000337581 SMUG1-005 54181468-54188974 protein_coding
  ENST00000401977 SMUG1-020 54181954-54188622 protein_coding
  ENST00000503231 SMUG1-015 54187214-54188957 processed_transcript
  ENST00000503306 SMUG1-018 54183695-54188974 protein_coding
  ENST00000503447 SMUG1-009 54183417-54188992 retained_intron
  ENST00000504338 SMUG1-017 54182392-54188871 protein_coding
  ENST00000504797 SMUG1-016 54183654-54188946 protein_coding
  ENST00000505128 SMUG1-007 54181457-54188972 protein_coding
  ENST00000505597 SMUG1-014 54186983-54188957 processed_transcript
  ENST00000505662 SMUG1-006 54181485-54187906 processed_transcript
  ENST00000506169 SMUG1-011 54183670-54188985 protein_coding
  ENST00000506595 SMUG1-021 54181453-54188607 protein_coding
  ENST00000507904 SMUG1-010 54182585-54188990 protein_coding
  ENST00000508394 SMUG1-001 54181275-54188994 protein_coding
  ENST00000509078 SMUG1-019 54182558-54184296 retained_intron
  ENST00000509864 SMUG1-022 54164745-54183933 nonsense_mediated_decay
  ENST00000511522 SMUG1-012 54182098-54188985 retained_intron
  ENST00000511854 SMUG1-023 54181453-54182759 retained_intron
  ENST00000513838 SMUG1-003 54180358-54188957 protein_coding
  ENST00000514196 SMUG1-013 54182072-54188980 protein_coding
  ENST00000514685 SMUG1-004 54181453-54188940 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000243112ENST00000337581ENST00000401977ENST00000504797ENST00000505128ENST00000505662ENST00000506595ENST00000507904ENST00000508394ENST00000509864ENST00000511522ENST00000511854ENST00000513838
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000243112 N/A N/A N/A N/A 2.303±1.83 3.898±0.00 N/A 10.341±0.00 9.670±0.00 N/A N/A 7.098±0.60 11.324±2.55 4.133±0.00
ENST00000337581 2.255±0.00 2.265±0.00 N/A 1.613±0.46 2.769±0.00 1.326±0.00 N/A 3.389±0.00 0.443±0.00 N/A 2.210±0.00 7.021±0.79 8.823±5.34 4.033±0.15
ENST00000401977 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.699±0.00 6.150±0.00 N/A 4.122±0.00
ENST00000504797 N/A N/A N/A N/A N/A N/A N/A 1.304±0.00 1.824±0.00 N/A N/A N/A N/A N/A
ENST00000505128 N/A 1.444±0.00 0.327±0.00 N/A 0.950±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505662 2.436±0.00 2.116±0.00 N/A 1.757±0.00 0.427±0.00 2.182±0.00 2.499±0.00 N/A 3.956±0.00 1.805±0.00 N/A N/A N/A N/A
ENST00000506595 N/A N/A N/A N/A N/A N/A 2.927±0.00 N/A N/A 3.463±0.00 N/A 4.862±0.00 N/A N/A
ENST00000507904 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.236±0.00 N/A N/A N/A N/A
ENST00000508394 1.354±0.00 N/A N/A N/A 0.173±0.00 N/A 0.097±0.00 N/A N/A N/A N/A 3.178±0.00 1.547±0.00 2.769±0.00
ENST00000509864 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.770±0.00 N/A N/A N/A N/A
ENST00000511522 N/A N/A 2.131±0.00 2.215±0.00 1.003±0.00 1.160±0.00 1.339±0.00 N/A N/A N/A N/A 2.740±0.00 N/A N/A
ENST00000511854 N/A N/A N/A N/A N/A N/A N/A 1.774±0.00 N/A N/A N/A N/A N/A N/A
ENST00000513838 N/A N/A N/A N/A 0.206±0.00 N/A 0.698±0.00 N/A 0.888±0.00 N/A N/A N/A 1.956±0.00 1.659±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SU CIL_0007SU_0001 VISTA 12:53718454-54321661
CIL_00084M CIL_00084M_0001 VISTA 12:53732854-54334005
CIL_00003L CIL_00003L_0001 CGP 12:54164745-54280133

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000703 IEA oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity
GO:0000737 IEA DNA catabolic process, endonucleolytic
GO:0003677 IEA DNA binding
GO:0004844 IDA uracil DNA N-glycosylase activity
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0006281 TAS DNA repair
GO:0006284 IDA base-excision repair
GO:0006285 TAS base-excision repair, AP site formation
GO:0017065 IDA single-strand selective uracil DNA N-glycosylase activity
GO:0019104 IDA DNA N-glycosylase activity
GO:0045008 TAS depyrimidination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063611 SMUG1 single-strand-selective monofunctional uracil-DNA glycosylase 1 protein_coding Danio_rerio
ENSMUSG00000036061 Smug1 single-strand selective monofunctional uracil DNA glycosylase protein_coding Mus_musculus

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