C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: single-strand-selective monofunctional uracil-DNA glycosylase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000243112 SMUG1-008 ENSG00000123415 9606 - 12:54181471-54188976 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonKidneyLiverOvaryPlacentaTestisENST00000243112
Transcript ID Breast Colon Kidney Liver Ovary Placenta Testis
ENST00000243112 2.303±1.83 3.898±0.00 10.341±0.00 9.670±0.00 7.098±0.60 11.324±2.55 4.133±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SU CIL_0007SU_0001 VISTA 12:53718454-54321661
CIL_00084M CIL_00084M_0001 VISTA 12:53732854-54334005
CIL_00003L CIL_00003L_0001 CGP 12:54164745-54280133

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0004844 IDA uracil DNA N-glycosylase activity
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0006281 TAS DNA repair
GO:0006284 IDA base-excision repair
GO:0006285 TAS base-excision repair, AP site formation
GO:0017065 IDA single-strand selective uracil DNA N-glycosylase activity
GO:0019104 IDA DNA N-glycosylase activity
GO:0045008 TAS depyrimidination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000064067 Smug1-201 protein_coding Mus_musculus 0 472

Loading