C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type X, alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000123500 COL10A1 9606 - 6:116118923-116158747 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000243222 COL10A1-201 116118923-116126133 protein_coding
  ENST00000327673 COL10A1-001 116119026-116125900 protein_coding
  ENST00000418500 COL10A1-002 116125339-116158747 protein_coding
  ENST00000452729 COL10A1-003 116121467-116126120 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000243222ENST00000327673ENST00000418500ENST00000452729
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000243222 0.019±0.00 N/A N/A 0.215±0.00 0.013±0.00 N/A N/A 0.246±0.00 0.027±0.00 0.308±0.00 0.673±0.00 N/A 0.034±0.01
ENST00000327673 N/A 0.053±0.00 0.330±0.00 0.260±0.23 0.435±0.00 0.209±0.00 0.058±0.00 N/A 0.528±0.00 0.476±0.00 N/A 0.045±0.00 0.042±0.00
ENST00000418500 N/A N/A N/A 2.231±0.00 N/A N/A N/A N/A N/A 6.500±0.00 2.817±0.00 N/A 0.159±0.00
ENST00000452729 0.078±0.00 N/A N/A N/A 0.864±0.74 N/A N/A 1.030±0.00 N/A 0.311±0.00 N/A N/A 0.104±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001EJ CIL_0001EJ_0002 CGP 6:115931149-116249497

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001501 TAS skeletal system development
GO:0001958 IEA endochondral ossification
GO:0005515 IEA protein binding
GO:0005576 TAS extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005581 IEA collagen trimer
GO:0005788 TAS endoplasmic reticulum lumen
GO:0005938 IEA cell cortex
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0030574 TAS collagen catabolic process
GO:0046872 IEA metal ion binding
GO:0051216 IEA cartilage development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054753 col10a1 collagen, type X, alpha 1 protein_coding Danio_rerio
ENSMUSG00000039462 Col10a1 collagen, type X, alpha 1 protein_coding Mus_musculus

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