C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type X, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000327673 COL10A1-001 ENSG00000123500 9606 - 6:116119026-116125900 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartLiverLungPlacentaTestisENST00000327673
Transcript ID Adrenal Bladder Brain Breast Colon Heart Liver Lung Placenta Testis
ENST00000327673 0.053±0.00 0.330±0.00 0.260±0.23 0.435±0.00 0.209±0.00 0.058±0.00 0.528±0.00 0.476±0.00 0.045±0.00 0.042±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001EJ CIL_0001EJ_0002 CGP 6:115931149-116249497

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 TAS skeletal system development
GO:0001958 IEA endochondral ossification
GO:0005515 IEA protein binding
GO:0005576 TAS extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005581 IEA collagen trimer
GO:0005788 TAS endoplasmic reticulum lumen
GO:0005938 IEA cell cortex
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0030574 TAS collagen catabolic process
GO:0046872 IEA metal ion binding
GO:0051216 IEA cartilage development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000105511 Col10a1-001 protein_coding Mus_musculus 0 2185

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