C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tetratricopeptide repeat domain 21B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000123607 TTC21B 9606 - 2:165857475-165953843 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000243344 TTC21B-001 165873362-165953843 protein_coding
  ENST00000392695 TTC21B-003 165857478-165890641 nonsense_mediated_decay
  ENST00000464374 TTC21B-006 165928717-165953745 retained_intron
  ENST00000476227 TTC21B-007 165949111-165953811 retained_intron
  ENST00000484129 TTC21B-008 165898627-165907720 retained_intron
  ENST00000486672 TTC21B-004 165857475-165871211 retained_intron
  ENST00000489714 TTC21B-005 165857475-165870991 processed_transcript
  ENST00000497425 TTC21B-009 165879634-165883955 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000243344ENST00000392695ENST00000484129ENST00000486672
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000243344 1.314±0.00 1.809±0.00 1.541±0.00 1.651±0.24 1.724±0.28 1.741±0.51 1.407±0.00 1.804±0.75 1.546±0.88 1.563±0.24 1.927±0.00 1.849±0.64 1.256±0.46 3.793±0.07
ENST00000392695 N/A N/A N/A 0.992±0.00 1.554±0.00 1.689±0.00 N/A N/A N/A 1.108±0.00 1.199±0.00 2.166±0.58 N/A 3.598±0.00
ENST00000484129 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.969±0.00 N/A
ENST00000486672 N/A N/A 17.795±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087V CIL_00087V_0001 VISTA 2:165345029-165948304
CIL_0006CI CIL_0006CI_0001 CGP 2:165747591-165953843
CIL_0006CL CIL_0006CL_0001 CGP 2:165857475-166128013

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005929 IEA cilium
GO:0006357 IMP regulation of transcription from RNA polymerase II promoter
GO:0007224 IEA smoothened signaling pathway
GO:0008589 IEA regulation of smoothened signaling pathway
GO:0021591 IEA ventricular system development
GO:0021798 IEA forebrain dorsal/ventral pattern formation
GO:0030991 IDA intraciliary transport particle A
GO:0035721 IEA intraciliary retrograde transport
GO:0035735 IEA intraciliary transport involved in cilium morphogenesis
GO:0060271 IEA cilium morphogenesis
GO:0061512 IMP protein localization to cilium

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012368 ttc21b tetratricopeptide repeat domain 21B protein_coding Danio_rerio
ENSMUSG00000034848 Ttc21b tetratricopeptide repeat domain 21B protein_coding Mus_musculus

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