C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006CL_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000123607-ENSG00000144285 CGP 9606 2:165857475-166128013
GeneTranscriptPositionBiotype
ENSG00000123607 (TTC21B)
tetratricopeptide repeat domain 21B 		ENST00000243344 (TTC21B-001) 165873362-165953843 protein_coding
ENST00000392695 (TTC21B-003) 165857478-165890641 nonsense_mediated_decay
ENST00000464374 (TTC21B-006) 165928717-165953745 retained_intron
ENST00000476227 (TTC21B-007) 165949111-165953811 retained_intron
ENST00000484129 (TTC21B-008) 165898627-165907720 retained_intron
ENST00000486672 (TTC21B-004) 165857475-165871211 retained_intron
ENST00000489714 (TTC21B-005) 165857475-165870991 processed_transcript
ENST00000497425 (TTC21B-009) 165879634-165883955 processed_transcript
ENSG00000144285 (SCN1A)
sodium channel, voltage-gated, type I, alpha subunit 		ENST00000303395 (SCN1A-001) 165989163-166073621 protein_coding
ENST00000375405 (SCN1A-002) 165989163-166073639 protein_coding
ENST00000409050 (SCN1A-003) 165991245-166073621 protein_coding
ENST00000423058 (SCN1A-201) 165989160-166073697 protein_coding
ENST00000473295 (SCN1A-005) 165996053-166000063 retained_intron
ENST00000491429 (SCN1A-004) 165998125-166002908 retained_intron
ENST00000507401 (SCN1A-007) 166073302-166128013 retained_intron
ENSG00000236107 (AC010127.3)
 ENST00000447809 (AC010127.3-001) 166081531-166301784 antisense
ENST00000595268 (AC010127.3-004) 166015680-166060458 antisense
ENST00000595647 (AC010127.3-003) 165957399-166171547 antisense
ENST00000597623 (AC010127.3-002) 165957430-166036385 antisense
ENST00000599041 (AC010127.3-005) 166036065-166171474 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0006CL_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034848-ENSMUSG00000064329 CGP 10090 2:66184327-66440840
GeneTranscriptPositionBiotype
ENSMUSG00000034848 (Ttc21b)
tetratricopeptide repeat domain 21B 		ENSMUST00000102718 (Ttc21b-001) 66184327-66256617 protein_coding
ENSMUST00000125446 (Ttc21b-003) 66184643-66256592 protein_coding
ENSMUST00000131503 (Ttc21b-002) 66231116-66249410 retained_intron
ENSMUST00000169968 (Ttc21b-004) 66218015-66235138 retained_intron
ENSMUSG00000064329 (Scn1a)
sodium channel, voltage-gated, type I, alpha 		ENSMUST00000077489 (Scn1a-004) 66270784-66351195 protein_coding
ENSMUST00000094951 (Scn1a-005) 66272884-66351177 protein_coding
ENSMUST00000112366 (Scn1a-001) 66270781-66410064 protein_coding
ENSMUST00000112371 (Scn1a-201) 66270782-66440837 protein_coding
ENSMUST00000129508 (Scn1a-002) 66348364-66440814 processed_transcript
ENSMUST00000138910 (Scn1a-006) 66335443-66440840 protein_coding
ENSMUST00000156865 (Scn1a-003) 66272892-66318139 processed_transcript
ENSMUSG00000085386 (Gm13630)
predicted gene 13630 		ENSMUST00000127849 (Gm13630-001) 66409494-66421588 processed_transcript
ENSMUSG00000086671 (Gm13618)
predicted gene 13618 		ENSMUST00000128859 (Gm13618-001) 66187836-66192813 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

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Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006CL_0001ENSG00000123607ENST00000243344ENST00000392695ENST00000464374ENST00000476227ENST00000484129ENST00000486672ENST00000489714ENST00000497425ENSG00000144285ENST00000303395ENST00000375405ENST00000409050ENST00000423058ENST00000473295ENST00000491429ENST00000507401ENSG00000236107ENST00000447809ENST00000595268ENST00000595647ENST00000597623ENST00000599041CIL_0006CL_0002ENSMUSG00000034848ENSMUST00000102718ENSMUST00000125446ENSMUST00000131503ENSMUST00000169968ENSMUSG00000064329ENSMUST00000077489ENSMUST00000094951ENSMUST00000112366ENSMUST00000112371ENSMUST00000129508ENSMUST00000138910ENSMUST00000156865ENSMUSG00000085386ENSMUST00000127849ENSMUSG00000086671ENSMUST00000128859
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006CL_0001ENSG00000123607ENST00000243344ENST00000392695ENST00000484129ENST00000486672ENSG00000144285ENST00000303395ENST00000375405ENST00000409050ENSG00000236107ENST00000447809CIL_0006CL_0002ENSMUSG00000034848ENSMUST00000102718ENSMUST00000125446ENSMUST00000169968ENSMUSG00000064329ENSMUST00000077489ENSMUST00000094951ENSMUST00000112366ENSMUST00000112371ENSMUST00000138910ENSMUST00000156865ENSMUSG00000085386ENSMUST00000127849ENSMUSG00000086671ENSMUST00000128859
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000123607 ENST00000243344 1.314±0.00 1.809±0.00 1.541±0.00 1.651±0.24 1.724±0.28 1.741±0.51 1.407±0.00 1.804±0.75 1.546±0.88 1.563±0.24 1.927±0.00 1.849±0.64 1.256±0.46 3.793±0.07
ENST00000392695 N/A N/A N/A 0.992±0.00 1.554±0.00 1.689±0.00 N/A N/A N/A 1.108±0.00 1.199±0.00 2.166±0.58 N/A 3.598±0.00
ENST00000464374 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476227 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484129 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.969±0.00 N/A
ENST00000486672 N/A N/A 17.795±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489714 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497425 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000144285 ENST00000303395 N/A N/A N/A N/A N/A N/A 0.077±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000375405 N/A N/A N/A 6.001±0.63 N/A N/A 0.045±0.00 N/A N/A N/A N/A 0.252±0.00 N/A N/A
ENST00000409050 N/A N/A N/A 4.886±0.00 N/A N/A 0.122±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000423058 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473295 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491429 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507401 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000236107 ENST00000447809 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.072±0.00 0.076±0.00 N/A N/A
ENST00000595268 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000595647 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000597623 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000599041 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000034848 ENSMUST00000102718 2.756±1.46 2.815±0.53 4.203±0.08 4.497±1.63 2.123±0.25 1.456±0.16 1.710±0.34 4.683±0.24 0.843±0.19 3.058±0.20 0.530±0.14 3.595±1.38 1.117±0.84 23.344±1.91
ENSMUST00000125446 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.156±0.05 2.020±1.07 0.546±0.27 23.271±0.00
ENSMUST00000131503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169968 N/A N/A N/A 0.613±0.10 N/A N/A N/A N/A N/A N/A N/A 0.435±0.08 N/A N/A
ENSMUSG00000064329 ENSMUST00000077489 0.033±0.03 N/A 0.070±0.00 2.704±0.00 0.014±0.00 N/A 0.008±0.00 0.012±0.01 0.004±0.00 0.026±0.00 0.010±0.01 0.027±0.01 0.006±0.00 0.116±0.04
ENSMUST00000094951 0.016±0.00 0.042±0.03 N/A N/A 0.014±0.00 N/A 0.022±0.01 N/A 0.007±0.01 N/A 0.014±0.00 0.079±0.05 N/A 0.055±0.01
ENSMUST00000112366 N/A N/A N/A 1.208±0.88 N/A N/A 0.028±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000112371 N/A N/A N/A 1.577±1.47 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129508 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138910 N/A N/A N/A N/A N/A N/A 0.132±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156865 0.016±0.00 N/A N/A 8.606±0.00 0.040±0.02 0.041±0.00 N/A 0.024±0.02 N/A 0.025±0.00 N/A 0.016±0.01 N/A 0.120±0.11
ENSMUSG00000085386 ENSMUST00000127849 0.013±0.00 N/A 0.007±0.00 0.059±0.01 N/A N/A N/A N/A N/A N/A N/A N/A 0.001±0.00 0.017±0.00
ENSMUSG00000086671 ENSMUST00000128859 N/A N/A 0.037±0.00 0.034±0.00 N/A N/A N/A N/A N/A N/A N/A 0.179±0.00 0.244±0.00 0.528±0.37

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